Collaborators

2021

Y. Yang, N. Karvounis, J. H. Walther, H. Ding, and C. Wen, “Effect of area ratio of the primary nozzle on steam ejector performance considering nonequilibrium condensations,” Energy, vol. 237, pp. 121483, 2021. Publisher's VersionAbstract
The formation and evaporation of nanodroplets in steam ejectors is neglected in many numerical simulations. We analyse the influence of a primary nozzle on steam ejector performances considering phase change processes. The numerical model is validated in detail against experimental data of supersonic nozzles and steam ejectors available in the literature. The results show that the first nonequilibrium condensation is observed within the primary nozzle, while under-expanded supersonic flow causes a second nucleation-condensation process to achieve a large liquid fraction of 0.26 in the steam ejector. The compression process of the supersonic flow results in a steep decrease of the degree of subcooling leading to droplet evaporations. The condensation and evaporation processes repeat alternatively depending on the flow behaviour in the mixing section. The increasing area ratio leads to the transition of the flow structure from under-expanded flows to over-expanded flows in the mixing section. The droplet diameter is about 7 nm in the constant section and the entrainment ratio can reach approximately 0.75 for an area ratio of 8, which achieves a good performance of the steam ejector.
J. C. Ong, K. M. Pang, X. - S. Bai, M. Jangid, and J. H. Walther, “Large-eddy simulation of n-dodecane spray flame: Effects of nozzle diameter on autoignition at varying ambient temperatures,” Proceedings of the Combustion Institute, vol. 38, no. 2. pp. 3427-3434, 2021. Publisher's VersionAbstract
In the present study, large-eddy simulations (LES) are used to identify the underlying mechanism that governs the ignition phenomena of spray flames from different nozzle diameters when the ambient temperature (Tam) varies. Two nozzle sizes of 90µm and 186µm are chosen. They correspond to the nozzle sizes used by Spray A and Spray D, respectively, in the Engine Combustion Network. LES studies of both nozzles are performed at three Tam of 800K, 900K, and 1000K. The numerical models are validated using the experimental liquid and vapor penetration, mixture fraction (Z) distribution, as well as ignition delay time (IDT). The ignition characteristics of both Spray A and Spray D are well predicted, with a maximum relative difference of 14% as compared to the experiments. The simulations also predict the annular ignition sites for Spray D at Tam ⩾ 900K, which is consistent with the experimental observation. It is found that the mixture with Z ⩽ 0.2 at the spray periphery is more favorable for ignition to occur than the overly fuel-rich mixture of Z > 0.2 formed in the core of spray. This leads to the annular ignition sites at higher Tam. Significantly longer IDT for Spray D is obtained at Tam of 800K due to higher scalar dissipation rates (χ) during high temperature (HT) ignition. The maximum χ during HT ignition for Spray D is larger than that in Spray A by approximately a factor of 5. In contrast, at K, the χ values are similar between Spray A and Spray D. This elucidates the increase in the difference of IDT between Spray D and Spray A as Tam decreases. This may explain the contradicting findings on the effects of nozzle diameters on IDT from literature.
A. Nemati, M. V. Jensen, K. M. Pang, and J. H. Walther, “Conjugate heat transfer simulation of sulfuric acid condensation in a large two-stroke marine engine - the effect of thermal initial condition,” Applied Thermal Engineering, vol. 195, pp. 117075, 2021. Publisher's VersionAbstract
In the present study, conjugate heat transfer (CHT) calculations are applied in a computational fluid dynamics (CFD) simulation to simultaneously solve the in-cylinder gas phase dynamics and the temperature field within the liner of the engine. The effects of different initial temperatures with linear profiles across the liner are investigated on the wall heat transfer as well as on the sulfuric acid formation and condensation. The temporal and spatial behavior of sulfuric acid condensation on the liner suggests the importance of CHT calculations under large two-stroke marine engine relevant conditions. Comparing the mean value of the heat transfer through the inner and outer sides of the liner, an initial temperature difference of 15 K with a linear profile is an appropriate initial condition to initiate the temperature within the liner. Moreover, the effect of the amount of water vapor in the air on the sulfuric acid formation and condensation is studied. The current results show that the sulfuric acid vapor formation is more sensitive to the variation of the water vapor amount than the sulfuric acid condensation.
J. C. Ong, K. M. Pang, M. Jangi, X. - S. Bai, and J. H. Walther, “Numerical study of the influence of turbulence-chemistry interaction model on {URANS} Simulations of diesel spray flame structures under marine engine-like conditions,” Energy Fuels, vol. 35, no. 14, pp. 11457–11467, 2021. Publisher's VersionAbstract
The present work performs unsteady Reynolds-averaged Navier–Stokes simulations to study the effect of turbulence–chemistry interaction (TCI) on diesel spray flames. Three nozzle diameters (d0) of 100, 180, and 363 μm are considered in the present study. The Eulerian stochastic fields (ESF) method (with the TCI effect) and well-stirred reactor (WSR) model (without the TCI effect) are considered in the present work. The model evaluation is carried out for ambient gas densities (ρam) of 30.0 and 58.5 kg/m3. The ESF method is demonstrated to be able to reproduce the ignition delay time (IDT) and lift-off length (LOL) with an improved accuracy than that from the WSR method. Furthermore, TCI has relatively more influence on LOL than on IDT. A normalized LOL (LOL*) is introduced, which considers the effect of d0, and its subsequent effect on the fuel-richness in the rich premixed core region is analyzed. The RO2 distribution is less influenced by the TCI effect as ambient density increases. The ESF model generally predicts a longer and wider CH2O distribution. The difference in the spatial distribution of CH2O between the ESF and WSR model diminishes as d0 increases. At ρam = 30.0 kg/m3, the ESF method results in a broader region of OH with lower peak OH values than in the WSR case. However, at ρam = 58.5 kg/m3, the variation of the peak OH value is less susceptible to the increase in d0 and the presence of the TCI model. Furthermore, the influence of TCI on the total OH mass decreases as d0 increases. The total NOx mass qualitatively follows the same trend as the total OH mass. This present work clearly shows that the influence of TCI on the global spray and combustion characteristics becomes less prominent when d0 increases.
M. Rønne, J. H. L. Allan, and Walther, J.H., “The nose-up effect in twin-box bridge flutter –- experimental observations and theoretical model,” Wind and structures, vol. 32, no. 4, pp. 293–308, 2021. Publisher's VersionAbstract
For the past three decades a significant amount of research has been conducted on bridge flutter. Wind tunnel tests for a 2000 m class twin-box suspension bridge have revealed that a twin-box deck carrying 4 m tall 50% open area ratio wind screens at the deck edges achieved higher critical wind speeds for onset of flutter than a similar deck without wind screens. A result at odds with the well-known behavior for the mono-box deck. The wind tunnel tests also revealed that the critical flutter wind speed increased if the bridge deck assumed a nose-up twist relative to horizontal when exposed to high wind speeds – a phenomenon termed the “nose-up” effect. Static wind tunnel tests of this twin-box cross section revealed a positive moment coefficient at 0⁰ angle of attack as well as a positive moment slope, ensuring that the elastically supported deck would always meet the mean wind flow at ever increasing mean angles of attack for increasing wind speeds. The aerodynamic action of the wind screens on the twin-box bridge girder is believed to create the observed nose-up aerodynamic moment at 0⁰ angle of attack. The present paper reviews the findings of the wind tunnel tests with a view to gain physical insight into the “nose-up” effect and to establish a theoretical model based on numerical simulations allowing flutter predictions for the twin-box bridge girder.
B. U. Anabaraonye, J. R. Bentzon, I. Khaliqdad, K. L. Feilberg, S. I. Andersen, and J. H. Walther, “The influence of turbulent transport in reactive processes: a combined numerical and experimental investigation in a Taylor-Couette reactor,” Chemical engineering journal, vol. 421, pp. 129591, 2021. Publisher's VersionAbstract
Turbulent reactive flows are ubiquitous in industrial processes. Decoupling transport effects from intrinsic chemical reactions requires an in-depth understanding of fluid flow physics; computational fluid dynamics (CFD) methods have been widely used for this purpose. Most CFD simulations of reactive liquid-phase flows, where the Schmidt numbers are large, rely on isotropic eddy viscosity models. However, the assumption of turbulent isotropy in most stirred reactors and wall-bounded flows is fundamentally incorrect and leads to erroneous re- sults. Here, we apply a systematic CFD approach to simulate liquid-phase diffusive and convective transport phenomena that occur in a Taylor-Couette (TC) reactor. We resolve the turbulent flow by extracting statistics from large eddy simulation which is used to tune the anisotropic Reynolds stress model. In addition, we con- ducted a series of turbulent precipitation and mixing studies in a TC reactor that was designed and fabricated in- house. The numerical model is successfully validated against a published torque correlation and it is found to accurately describe the advection and diffusion of chemical species. The validated model is then used to demonstrate key flow properties in the reactor. We define new local turbulent Pecl ́et numbers to characterize the relative increase in diffusivity from turbulent advection and observe a 29% increase in the turbulent contribution as Reynolds number is doubled. Both reactive simulations and experiments show an increase in overall reaction rates with increased turbulence. The results from reactive simulations provide a deeper understanding of flow- kinetics interactions at turbulent conditions.
J. C. Ong, K. M. Pang, J. H. Walther, J. Ho, and H. K. Ng, “Effect of ambient oxygen and density on primary soot size under diesel-like conditions using a Lagrangian Soot Tracking model,” International journal of engines, vol. 14, no. 2, pp. 03-14-02-0018, 2021. Publisher's VersionAbstract
This article investigates the effect of ambient oxygen (O2) levels and ambient density on the primary soot size under diesel engine-like conditions via the Lagrangian soot tracking (LST) method. The numerical studies and soot analysis are carried out for an n-heptane spray flame in the Sandia constant volume combustion chamber. Numerical studies are carried out at two O2 levels of 15% and 12%, as well as two ambient densities of 14.8 kg/m3 and 30 kg/m3. The LST model involves treating the soot particles formed in the spray flame as Lagrangian particles, and their individual soot information is stored. Based on the primary soot size distribution for soot particles in the core of the spray jet, an increase in ambient density from 14.8 kg/m3 to 30 kg/m3 is shown to increase the peak and mean soot size by a factor of 1.5. Furthermore, the peak and mean primary soot size decreases with decreasing O2 levels from 15% to 12%. The larger primary soot size at higher O2 levels and ambient densities can be attributed to the higher net growth rate experienced by the soot particles. At low density, the span of the soot cloud is shorter O2 level is low. In contrast, the highdensity cases show a comparable soot cloud span at both O2 levels before steady-state is reached. Soot age is introduced to predict the soot residence time in the spray flame. The results show that the soot residence time is dependent on both the span of the soot cloud and the initial onset location of the soot formed.
J. C. Ong, K. M. Pang, and J. H. Walther, “Prediction method for ignition delay time of liquid spray combustion in constant volume chamber,” Fuel, vol. 287, pp. 119539, 2021. Publisher's VersionAbstract
A prediction method, known as the Coupled Time Scale (CTS) method, is proposed in the current work to estimate the ignition delay time (IDT) of liquid spray combustion by only performing an inert spray simulation and a zero-dimensional (0-D) homogeneous reactor (HR) simulation. The method is built upon the assumption that if the majority of the vapor regions in a spray has a composition close to the most reactive mixture fraction, which can be obtained by performing 0-D HR calculations, these regions will then have a high probability to undergo high-temperature ignition in the spray. The proposed method is applied to estimate the high-temperature IDT of n-dodecane sprays. Two nozzle diameters (Dnoz) of 90 um and 186 um which correspond to Spray A and Spray D in the Engine Combustion Network [1] respectively, are considered. Both are tested at three ambient temperatures (Tam) of 800 K, 900 K, and 1000 K. The fidelity of the proposed CTS method is verified by comparing the predicted IDT against CFD simulated IDT and measured IDT. Comparison of the estimated IDT from the CTS method to the measured IDT yields a maximum relative difference of 24%. Meanwhile, a maximum relative difference of 33% is found between the IDTs computed from the CTS method and the large eddy simulations of the associated reacting sprays across the different Tam, Dnoz and chemical mechanisms considered in this study.
S. Sørensen, S. S. Asadzadeh, and J. H. Walther, “Hydrodynamics of prey capture and transportation in choanoflagellates,” Fluids, vol. 6, no. 3, pp. 94, 2021. Publisher's VersionAbstract
Choanoflagellates are unicellular microscopic organisms that are believed to be the closest living relatives of animals. They prey on bacteria through the act of the continuous beating of their flagellum, which generates a current through a crown-like filter. Subsequently, the filter retains bacterial particles from the suspension. The mechanism by which the prey is retained and transported along the filter remains unknown. We report here on the hydrodynamic effects on the transportability of bacterial prey of finite size using computational fluid dynamics. Here, the loricate choanoflagellate Diaphaoneca grandis serves as the model organism. The lorica is a basket-like structure found in only some of the species of choanoflagellates. We find that although transportation does not entirely rely on hydrodynamic forces, such forces positively contribute to the transportation of prey along the collar filter. The aiding effects are most possible in non-loricate choanoflagellate species, as compared to loricate species. As hydrodynamic effects are strongly linked to the beat and shape of the flagellum, our results indicate an alternative mechanism for prey transportation, especially in biological systems where having an active transport mechanism is costly or not feasible. This suggests an additional potential role for flagella in addition to providing propulsion and generating feeding currents.
M. Zhang, J. C. Ong, K. M. Pang, X. Bai, and J. H. Walther, “An investigation on early evolution of soot in n-dodecane spray combustion using large eddy simulation ,” Fuel, vol. 293, pp. 120072, 2021. Publisher's VersionAbstract
Numerical simulations using large eddy simulation (LES) and Unsteady Reynolds Averaged Navier–Stokes (URANS) are carried out to identify the underlying mechanisms that govern the early soot evolution process in an n-dodecane spray flame at 21% O2 by molar concentration. A two-equation phenomenological soot model is used here to simulate soot formation and oxidation. Both ignition delay time (IDT) and lift-off length (LOL) are found to agree with experimental measurements. The transient evolution of soot mass, in particularly the soot spike phenomenon, is captured in the present LES cases, but not in the URANS cases. Hence, a comparison of numerical results from LES and URANS simulations is conducted to provide a better insight of this phenomenon. LES is able to predict the rapid increasing soot mass during the early stage of soot formation due to having a large favorable region of equivalence ratio (ϕ > 1.5) and temperature (T > 1800 K) for soot formation. This favorable region increases and then decreases to reach a quasi-steady state in the LES case, while it continues to increase in the URANS simulation during the early time. In addition, the soot spike is a consequence of the competition between soot formation and oxidation rates. The time instance when the total soot mass reaches peak value coincides with the time instance when the total mass of soot precursor reaches a plateau. The soot spike is formed due to the continuous increase of oxidizing species in the LES case which leads to a more dominant oxidation process than the formation process.
J. Mortensen, J. F. Fauerholt, H. H. Emil, and Walther, J.H., “Discrete element modelling of track ballast capturing the true shape of ballast stones,” Powder technology, vol. 386, pp. 144–153, 2021. Publisher's VersionAbstract
Railway ballast affected by heavy cyclic loading degrades and spreads resulting in an uncomfortable transportation caused by undesirable vibrations. Restoring a well sorted track ballast can be expensive. This paper analyzes track ballast deformation using the Discrete Element Method (DEM). The simulations are performed using the STAR-CCM+ software in a three-dimensional domain. Four track ballast models are studied. The first two models describe the ballast as spheres with and without rolling resistance, respectively. The third model uses a clump model that allows breaking of the ballast, whereas the fourth model describes the ballast as composite particles generated from 3D-scanned ballast stones. The sleepers and rails are modelled as DEM particles. As a supplement to the study of different ballast models, the influence of variation in the loading profile is investigated. The largest obtained deformation is observed in the ballast modelled as spheres and the smallest deformation in the ballast modelled from the 3D scanned ballast stones. The results highlight the importance of describing the ballast as non-spherical geometries.
R. Molinaro, J. Singh, S. Catsoulis, C. Narayanan, and D. Lakehal, “Embedding data analytics and CFD into the digital twin concept,” Computers & Fluids, vol. 214, pp. 104759, 2021. Publisher's VersionAbstract
Computer-Aided Engineering (CAE) has supported the industry in its transition from trial-and-error towards physics-based modelling, but our ways of treating and exploiting the simulation results have changed little during this period. Indeed, the business model of CAE centers almost exclusively around delivering base-case simulation results with a few additional operational conditions. In this contribution, we introduce a new paradigm for the exploitation of computational physics data, consisting in using machine learning to enlarge the simulation databases in order to cover a wider spectrum of operational conditions and provide quick response directly on field. The resulting product from this hybrid physics-informed and data-driven modelling is referred to as Simulation Digital Twin (SDT). While the paradigm can be equally used in different CAE applications, in this paper we address its implementation in the context of Computational Fluid Dynamics (CFD). We show that the generation of Simulation Digital Twins can be efficiently accomplished with the combination of the CFD tool TransAT and the data analytics platform eDAP.
J. C. Ong, J. H. Walther, S. Xu, S. Zhong, X. Bai, and K. M. Pang, “Effects of ambient pressure and nozzle diameter on ignition characteristics in diesel spray combustion,” Fuel, vol. 290, pp. 119887, 2021. Publisher's VersionAbstract
Numerical simulations are performed to investigate the effects of ambient density (ρam) and nozzle diameter (Dnoz) on the ignition characteristic of diesel spray combustion under engine-like conditions. A total of nine cases which consist of different ρam of 14.8, 30.0, and 58.5 kg/m3 and different Dnoz of 100, 180, and 363μm are considered. The results show that the predicted ignition delay times are in good agreement with measurements. The current results show that the mixture at the spray central region becomes more fuel-rich as Dnoz increases. This leads to a shift in the high-temperature ignition location from the spray tip towards the spray periphery as Dnoz increases at ρam of 14.8 kg/m3 . At higher ρam of 30.0 and 58.5 kg/m3 , the ignition locations for all Dnoz cases occur at the spray periphery due to shorter ignition timing and the overly fuel-rich spray central region. The numerical results show that the first ignition location during the high-temperature ignition occurs at the fuel-rich region at ρam⩽30.0 kg/m3 across different Dnoz. At ρam = 58.5 kg/m3 , the ignition occurs at the fuel-lean region for the 100 and 180μm cases, but at the fuel-rich region for the 363μm nozzle case. This distinctive difference in the result at 58.5 kg/m3 is likely due to the relatively longer ignition delay time in the 363μm nozzle case. Furthermore, the longer ignition delay time as Dnoz increases can be related to the higher local scalar dissipation rate in the large nozzle case.

2020

S. S. Asadzadeh, T. Kiørboe, P. S. Larsen, S. P. Leys, G. Yahel, and J. H. Walther, “Hydrodynamics of sponge pumps and evolution of the sponge body plan,” eLife, vol. 9, 2020. Publisher's VersionAbstract
Sponges are suspension feeders that filter vast amounts of water. Pumping is carried out by flagellated chambers that are connected to an inhalant and exhalant canal system. In ‘leucon’ sponges with relatively high-pressure resistance due to a complex and narrow canal system, pumping and filtering are only possible owing to the presence of a gasket-like structure (forming a canopy above the collar filters). Here, we combine numerical and experimental work and demonstrate how sponges that lack such sealing elements are able to efficiently pump and force the flagella-driven flow through their collar filter, thanks to the formation of a ‘hydrodynamic gasket’ above the collar. Our findings link the architecture of flagellated chambers to that of the canal system, and lend support to the current view that the sponge aquiferous system evolved from an open-type filtration system, and that the first metazoans were filter feeders.
J. R. Bentzon, A. Vural, K. L. Feilberg, and J. H. Walther, “Surface Wetting In Multiphase Pipe-Flow,” Multiphase science and technology, vol. 32, no. 2, pp. 137–154, 2020. Publisher's VersionAbstract

The present study examines the quantity of surface wetting in a two-phase oil and water pipe flow. The study is performed by employing an Eulerian-Eulerian computational fluid dynamics model using the S-gamma droplet size distribution model within STAR-CCM+. In the North Sea, production of oil and gas, water-phase surface processes such as scale and corrosion account for 40-50% of operating expenses. The objective of the study is to investigate best practices for the prediction of phase distribution aimed at evaluating the degree of the wall in contact with the water phase (water-wetting). The model is validated by performing detailed numerical simulations corresponding to the experimental studies by Kumara, Halvorsen, and Melaaen (Meas. Sci. Technol., vol. 20, p. 114004, 2009). The comparison yields good agreement with the observed measurements with slight deviations in the predicted dispersion rate but accurate prediction of the liquid holdup. Comparison of droplet sizes to those observed in experiments by Elseth (PhD, Telemark University College, 2001) indicates that tuning of the S-gamma model is necessary to provide accurate droplet size predictions. The surface wetting is then evaluated with its interdependence with liquid holdup and dispersion rate. Increase in the dispersion with a decrease in the Richardson number is observed in agreement with stability analysis of the Kelvin-Helmholtz instability.

J. C. Ong, K. M. Pang, and J. H. Walther, “Prediction method for ignition delay time of liquid spray combustion in constant volume chamber,” Fuel, vol. 287, pp. 119539, 2020. Publisher's VersionAbstract
A prediction method, known as the Coupled Time Scale (CTS) method, is proposed in the current work to estimate the ignition delay time (IDT) of liquid spray combustion by only performing an inert spray simulation and a zero-dimensional (0-D) homogeneous reactor (HR) simulation. The method is built upon the assumption that if the majority of the vapor regions in a spray has a composition close to the most reactive mixture fraction, which can be obtained by performing 0-D HR calculations, these regions will then have a high probability to undergo high-temperature ignition in the spray. The proposed method is applied to estimate the high-temperature IDT of n-dodecane sprays. Two nozzle diameters (Dnoz) of 90 μm and 186 μm which correspond to Spray A and Spray D in the Engine Combustion Network [1] respectively, are considered. Both Dnoz are tested at three ambient temperatures (Tam) of 800 K, 900 K, and 1000 K. The fidelity of the proposed CTS method is verified by comparing the predicted IDT against CFD simulated IDT and measured IDT. Comparison of the estimated IDT from the CTS method to the measured IDT yields a maximum relative difference of 24%. Meanwhile, a maximum relative difference of 33% is found between the IDTs computed from the CTS method and the large eddy simulations of the associated reacting sprays across the different Tam,Dnoz, and chemical mechanisms considered in this study.
J. C. Ong, K. M. Pang, X. Bai, M. Jangi, and J. H. Walther, “Large-eddy simulation of n-dodecane spray flame: effects of nozzle diameter on autoignition at varying ambient temperatures,” Proceedings of the Combustion Institute, vol. 38, pp. 3427–3434, 2020. Publisher's VersionAbstract
In the present study, large-eddy simulations (LES) are used to identify the underlying mechanism that governs the ignition phenomena of spray flames from different nozzle diameters when the ambient temperature (Tam) varies. Two nozzle sizes of 90µm and 186µm are chosen. They correspond to the nozzle sizes used by Spray A and Spray D, respectively, in the Engine Combustion Network. LES studies of both nozzles are performed at three Tam of 800K, 900K, and 1000K. The numerical models are validated using the experimental liquid and vapor penetration, mixture fraction (Z) distribution, as well as ignition delay time (IDT). The ignition characteristics of both Spray A and Spray D are well predicted, with a maximum relative difference of 14% as compared to the experiments. The simulations also predict the annular ignition sites for Spray D at Tam ⩾ 900K, which is consistent with the experimental observation. It is found that the mixture with Z ⩽ 0.2 at the spray periphery is more favorable for ignition to occur than the overly fuel-rich mixture of Z > 0.2 formed in the core of spray. This leads to the annular ignition sites at higher Tam. Significantly longer IDT for Spray D is obtained at Tam of 800K due to higher scalar dissipation rates (χ) during high temperature (HT) ignition. The maximum χ during HT ignition for Spray D is larger than that in Spray A by approximately a factor of 5. In contrast, at Tam=1000K, the χ values are similar between Spray A and Spray D. This elucidates the increase in the difference of IDT between Spray D and Spray A as Tam decreases. This may explain the contradicting findings on the effects of nozzle diameters on IDT from literature.
J. C. Ong, K. M. Pang, X. Bai, M. Jangi, and J. H. Walther, “Large-eddy simulation of n-dodecane spray flame: effects of nozzle diameters on autoignition at varying ambient temperatures,” Proceedings of the Combustion Institute, vol. 38, no. 2, pp. 3427-3434, 2020. Publisher's VersionAbstract
In the present study, large-eddy simulations (LES) are used to identify the underlying mechanism that governs the ignition phenomena of spray flames from different nozzle diameters when the ambient temperature (Tam) varies. Two nozzle sizes of 90µm and 186µm are chosen. They correspond to the nozzle sizes used by Spray A and Spray D, respectively, in the Engine Combustion Network. LES studies of both nozzles are performed at three Tam of 800K, 900K, and 1000K. The numerical models are validated using the experimental liquid and vapor penetration, mixture fraction (Z) distribution, as well as ignition delay time (IDT). The ignition characteristics of both Spray A and Spray D are well predicted, with a maximum relative difference of 14% as compared to the experiments. The simulations also predict the annular ignition sites for Spray D at Tam ⩾ 900K, which is consistent with the experimental observation. It is found that the mixture with Z ⩽ 0.2 at the spray periphery is more favorable for ignition to occur than the overly fuel-rich mixture of Z > 0.2 formed in the core of spray. This leads to the annular ignition sites at higher Tam. Significantly longer IDT for Spray D is obtained at Tam of 800K due to higher scalar dissipation rates (χ) during high temperature (HT) ignition. The maximum χ during HT ignition for Spray D is larger than that in Spray A by approximately a factor of 5. In contrast, at Tam=1000K, the χ values are similar between Spray A and Spray D. This elucidates the increase in the difference of IDT between Spray D and Spray A as Tam decreases. This may explain the contradicting findings on the effects of nozzle diameters on IDT from literature.
A. Nemati, J. C. Ong, M. V. Jensen, K. M. Pang, S. Mayer, and J. H. Walther, “Numerical study of the scavenging process in a large two-stroke marine engine using urans and les turbulence models,” Society of Automotive Engineers (SAE) Powertrains, Fuels and Lubricants Meeting (PF&L), pp. 9, 2020. Publisher's VersionAbstract
A computational fluid dynamics study of the scavenging process in a large two-stroke marine engine is presented in this work. Scavenging which is one of the key processes in the two-stroke marine engines, has a direct effect on fuel economy and emissions. This process is responsible for fresh air delivery, removing the combustion products from the cylinder, cooling the combustion chamber surfaces and providing a swirling flow for better air-fuel mixing. Therefore, having a better understanding of this process and the associated flow pattern is crucial. This is not achievable solely by experimental tests for large engines during engine operation due to the difficulties of measuring the flow field inside the cylinder. In this study, the axial and tangential velocities are compared and validated with the experimental results obtained from Particle Image Velocimetry (PIV) tests [1]. The simulations are conducted using both Unsteady Reynolds Averaged Navier Stokes (URANS) and Large Eddy Simulation (LES) turbulence models. We observe in general, there is a good agreement between the numerical and experimental results. The flow inside the cylinder is studied in different locations related to the bottom of the scavenging ports during the period with open exhaust valve. Moreover, the replacement of combustion products with fresh scavenge air is analysed. The effective flow angle is calculated for the air flow through the scavenging ports. It is found that the effective flow angle is different from the geometrical angle of the ports (20°). Results illustrate better performance of LES, especially in the prediction of the tangential velocity which is crucial for the simulation of an accurate swirl and air-fuel mixing inside the marine engines. LES predicts a uniform profile for the tangential velocity at the top of cylinder which is consistent with the experimental results while URANS predicts a solid body rotation.
E. Wagemann, D. Becerra, J. H. Walther, and H. A. Zambrano, “Water flow enhancement in amorphous silica nanochannels coated with monolayer graphene ,” Materials Research Society Communications, vol. 10, no. 3, pp. 1-6, 2020. Publisher's VersionAbstract
Inspired by the recently reported translucency of monolayer graphene (GE) to wetting, atomistic simulations are employed to evaluate water flow enhancement induced by GE deposited on the inner surfaces of hydrophilic nanochannels. The flow in the coated channels exhibits a slip length of approximately 3.0 nm. Moreover, by contrasting the flow rates in channels with coated walls against flow rates in the corresponding uncoated channels, an “effective” flow enhancement from 3.2 to 3.7 is computed. The probability density function of the water dipole orientation indicates that the flow enhancement is related to a thinner structured water layer at the solid–liquid interface. This study provides quantitative evidence that GE employed as coating reduces substantially hydraulic losses in hydrophilic nanoconfinement.
K. Vontas, et al., “Droplet impact on suspended metallic meshes: effects of wettability, reynolds and weber numbers,” Fluids, vol. 5, no. 2, pp. 81, 2020. Publisher's VersionAbstract
Liquid penetration analysis in porous media is of great importance in a wide range of applications such as ink jet printing technology, painting and textile design. This article presents an investigation of droplet impingement onto metallic meshes, aiming to provide insights by identifying and quantifying impact characteristics that are difficult to measure experimentally. For this purpose, an enhanced Volume-Of-Fluid (VOF) numerical simulation framework is utilised, previously developed in the general context of the OpenFOAM CFD Toolbox. Droplet impacts on metallic meshes are performed both experimentally and numerically with satisfactory degree of agreement. From the experimental investigation three main outcomes are observed—deposition, partial imbibition, and penetration. The penetration into suspended meshes leads to spectacular multiple jetting below the mesh. A higher amount of liquid penetration is linked to higher impact velocity, lower viscosity and larger pore size dimension. An estimation of the liquid penetration is given in order to evaluate the impregnation properties of the meshes. From the parametric analysis it is shown that liquid viscosity affects the adhesion characteristics of the drops significantly, whereas droplet break-up after the impact is mostly controlled by surface tension. Additionally, wettability characteristics are found to play an important role in both liquid penetration and droplet break-up below the mesh.
H. Mikkelsen and J. H. Walther, “Effect of roughness in full-scale validation of a CFD model of self-propelled ships,” Applied Ocean Research, vol. 99, no. 1, pp. 102162, 2020. Publisher's VersionAbstract
This paper presents a comparison of full-scale computational fluid dynamics (CFD) simulations with speed trial measurements for a ro-ro vessel and a general cargo vessel. Significant work has been done on validating CFD simulation in model scale. However, in full-scale very few publicly available studies have been conducted due to limited access of validation data. The present study includes extensive validation and verification of both resistance, propeller open-water and self-propulsion simulations in both model and full-scale. The self-propulsion simulations include modelling of the free surface and rotation of the 3D propeller. Full-scale resistance and propeller open-water as well as model scale self-propulsion simulations show good agreement with towing tank measurements and predictions. However, the full-scale self-propulsion simulations using the traditional approach of including the roughness as a point force estimated by an empirical formula significantly underestimate the power from the speed trial measurements. By including the effect of hull and propeller roughness directly into the CFD model, by modifying the wall functions, the discrepancy between CFD and speed trial measurements decreases significantly. This indicates that inclusion of a roughness model directly into the CFD simulation could be a more accurate method than the traditional approach of using empirical formulas originally designed for towing tank extrapolation.
C. Wen, N. Karvounis, J. H. Walther, H. Ding, and Y. Yang, “Non-equilibrium condensation of water vapour in supersonic flows with shock waves,” International Journal of Heat and Mass Transfer, vol. 149, pp. 119109, 2020. Publisher's VersionAbstract
The fluid flow and heat and mass transfer in a supersonic separator are not understood well due to the complicated interaction of the supersonic flow, swirling flow, phase transition and shock waves. In the present study, we develop a wet steam model to investigate the flow structure inside a supersonic separator with the co-existence of non-equilibrium condensation and shock waves. A study of the effect of the inlet subcooling and inlet saturation on the condensation behaviour is conducted to evaluate the performance of the supersonic separation with a focus on the shock wave. The numerical result shows that the degree of supersaturation of the water vapour can reach a maximum value of 4.28 within the designed supersonic separator and generate a peak nucleation rate of approximately 1021 kg m−3 s−1. The occurrence of the shock wave changes the equilibrium thermodynamic state, which leads to the re-evaporation of the condensed droplet. Higher inlet subcooling and inlet saturation not only shift downstream the position of the shock wave, but also induce an earlier condensation and higher liquid fraction. For the present nozzle, when the inlet subcooling and inlet saturation are about 34 K and 0.28 respectively, the shock wave intersects the region of the intense nucleation process, the non-equilibrium condensation process is terminated due to the increase of the pressure and temperature downstream the shock wave. Stronger swirling flow results in non-uniform distribution of the static pressure and decreases the nucleation rate of water vapour. The high swirling flow with a maximum swirl velocity of 150 m/s weakens the liquid fraction by 25% compared to the no swirling flow. This indicates that it is important to balance the swirling flow and condensation process to achieve an efficient performance of the supersonic separator.
J. Canton, “Critical point for bifurcation cascades and featureless turbulence,” Physical Review Letters, vol. 124, no. 1, 2020. Publisher's VersionAbstract
In this Letter we show that a bifurcation cascade and fully sustained turbulence can share the phase space of a fluid flow system, resulting in the presence of competing stable attractors. We analyze the toroidal pipe flow, which undergoes subcritical transition to turbulence at low pipe curvatures (pipe-totorus diameter ratio) and supercritical transition at high curvatures, as was previously documented. We unveil an additional step in the bifurcation cascade and provide evidence that, in a narrow range of intermediate curvatures, its dynamics competes with that of sustained turbulence emerging through subcritical transition mechanisms.

2019

J. Zavadlav, S. J. Marrink, and M. Praprotnik, “SWINGER: a clustering algorithm for concurrent coupling of atomistic and supramolecular liquids ,” Interface Focus, vol. 9, no. 3, pp. 20180075, 2019. Publisher's VersionAbstract

In this contribution, we review recent developments and applications of a dynamic clustering algorithm SWINGER tailored for the multiscale molecular simulations of biomolecular systems. The algorithm on-the-fly redistributes solvent molecules among supramolecular clusters. In particular, we focus on its applications in combination with the adaptive resolution scheme, which concurrently couples atomistic and coarse-grained molecular representations. We showcase the versatility of our multiscale approach on a few applications to biomolecular systems coupling atomistic and supramolecular water models such as the well-established MARTINI and dissipative particle dynamics models and provide an outlook for future work.

B. Rogie, W. B. Markussen, J. H. Walther, and M. R. Kærn, “Numerical investigation of air-side heat transfer and pressure drop characteristics of a new triangular finned microchannel evaporator with water drainage slits,” Fluids, vol. 4, no. 4, pp. 205, 2019. Publisher's VersionAbstract

The present study investigated a new microchannel profile design encompassing condensate drainage slits for improved moisture removal with use of triangular shaped plain fins. Heat transfer and pressure drop correlations were developed using computational fluid dynamics (CFD) and defined in terms of Colburn j-factor and Fanning f-factor. The microchannels were square 2.00 × 2.00 mm and placed with 4.50 mm longitudinal tube pitch. The transverse tube pitch and the triangular fin pitch were varied from 9.00 to 21.00 mm and 2.50 to 10.00 mm, respectively. Frontal velocity ranged from 1.47 to 4.40 m·s−1. The chosen evaporator geometry corresponds to evaporators for industrial refrigeration systems with long frosting periods. Furthermore, the CFD simulations covered the complete thermal entrance and developed regions, and made it possible to extract virtually infinite longitudinal heat transfer and pressure drop characteristics. The developed Colburn j-factor and Fanning f-factor correlations are able to predict the numerical results with 3.41% and 3.95% deviation, respectively.

H. Taghavifar, A. Nemati, and J. H. Walther, “Combustion and exergy analysis of multi-component diesel-DME-methanol blends in HCCI engine,” Energy, vol. 187, pp. 115951, 2019. Publisher's VersionAbstract

A homogeneous compression ignition (HCCI) engine is taken for numerical investigation on the application of renewable fuels contained blends of methanol and DME with the base diesel fuel, which will be replaced with diesel in different percentages. First, the combustion and engine performance of the engine for two and three-component fuels will be discussed and secondly, the simultaneous effect of EGR in 20% by mass and engine speed in two blends of having maximum and minimum diesel proportion are compared and examined. The results indicate that the replacement of diesel with 20% of DME and 30% by methanol (D50M30DME20) at 1400 rpm generates a greater pressure and accumulated heat (AHRpeak = 330.569 J), whereas D80M20/2000 rpm/EGR20 gives a defective combustive performance with poor engine efficiency (IMEP = 7.21 bar). The interesting point is that the proposed optimum blend of D50 can achieve the best performance with  35% mechanical efficiency of 35%. The case of D60M10DME30 though dominates in terms of RPR = 3.177 bar/deg and ignition delay (ID = 4.54 CA) that gives the highest exergy performance coefficient (EPC = 2.063) due to its high work and lowest irreversibility.

E. Wagemann, J. H. Walther, E. R. Cruz-Chú, and H. A. Zambrano, “Water flow in silica nanopores coated by carbon nanotubes from a wetting translucency perspective,” Journal of Physical Chemistry, vol. 123, no. 42, pp. 25635–25642, 2019. Publisher's VersionAbstract

Nearly frictionless water transport makes carbon nanotubes promising materials for use as conduits in nanofluidic applications. Here, we conduct molecular dynamics simulations of water flow within amorphous silica nanopores coated by a (39,39) single-walled carbon nanotube (SWCNT). Our atomistic models describe the interaction between water and pore walls based on two possible scenarios, translucency and opacity to wetting of a SWCNT. Simulation results indicate that the SWCNT coating enhances water flow through silica pores ca. 10 times compared to predictions from the classical Hagen–Poiseuille relation. By varying the strength of the water–pore interaction, we study the relationship between surface wettability and hydrodynamic slippage. We observe an increase in the slip length for higher values of water contact angle. Moreover, cases with SWCNT opacity and translucency to wetting display a substantial difference in the computed slippage, showing that the water contact angle is not the only factor that determines the slip boundary condition under nanoconfinement. We attribute this disparity to the corrugation of the potential energy landscape at the inner pore wall. The present study provides a theoretical framework for the use of carbon nanotube-based coatings in designing more efficient nanofluidic conduits.

C. S. Hemmingsen, et al., “Multiphase coupling of a reservoir simulator and computational fluid dynamics for accurate near-well flow,” Journal of Petroleum Science and Engineering, vol. 178, pp. 517–527, 2019. Publisher's VersionAbstract

Near-well flow analysis is an important tool for gaining detailed insight of the flow behaviour and for improving well design and production optimization of real reservoirs. One challenge of accurate numerical modelling of the flow field in the vicinity of the well is related to the scale disparity factor in space and time. The numerical scale gap between the reservoir and the wellbore justifies the representation of a well as a point or line sink/source term in traditional reservoir models. However, standard numerical techniques for reservoir simulation are incapable of resolving the near-singular character of the pressure field in the vicinity of the well. Under the assumption that all length scales have impact on flow patterns, we present a proof-of-concept study aimed at improving the quality of the numerical simulation by considering the geometry and fluid flow near the wellbore in a fully connected system, thus accounting for the fine scale phenomena by means of a hybrid Navier-Stokes/Darcy wellbore model coupled with a full scale reservoir model. A weak coupling method based on fixed-point iterations, that preserves the mass flux transport across the coupled interface, while adjusting productivity indices, is demonstrated via numerical experiments. Several different numerical experiments are performed to demonstrate the versatility and the improved well performance insight that the coupled method offers, including horizontal well inflow profile, influence of formation damage and optimal well configuration.

M. M. Hejlesen, G. Winckelmans, and J. H. Walther, “Non-singular green’s functions for the unbounded poisson equation in one, two and three dimensions,” Applied Mathematics Letters, vol. 89, pp. 28–34, 2019. Publisher's VersionAbstract

In this paper, we derive the non-singular Green’s functions for the unbounded Poisson equation in one, two and three dimensions using a spectral cut-off function approach to impose a minimum length scale in the homogeneous solution. The resulting non-singular Green’s functions are relevant to applications which are restricted to a minimum resolved length scale (e.g. a mesh size h) and thus cannot handle the singular Green’s function of the continuous Poisson equation. We furthermore derive the gradient vector of the non-singular Green’s function, as this is useful in applications where the Poisson equation represents potential functions of a vector field.

C. Wen, N. Karvounis, J. H. Walther, Y. Yan, Y. Feng, and Y. Yang, “An efficient approach to separate CO2 using supersonic flows for carbon capture and storage,” Applied Energy, vol. 238, pp. 311–319, 2019. Publisher's VersionAbstract

The mitigation of CO2 emissions is an effective measure to solve the climate change issue. In the present study, we propose an alternative approach for CO2 capture by employing supersonic flows. For this purpose, we first develop a computational fluid dynamics (CFD) model to predict the CO2 condensing flow in a supersonic nozzle. Adding two transport equations to describe the liquid fraction and droplet number, the detailed numerical model can describe the heat and mass transfer characteristics during the CO2 phase change process under the supersonic expansion conditions. A comparative study is performed to evaluate the effect of CO2 condensation using the condensation model and dry gas assumption. The results show that the developed CFD model predicts accurately the distribution of the static temperature contrary to the dry gas assumption. Furthermore, the condensing flow model predicts a CO2 liquid fraction up to 18.6% of the total mass, which leads to the release of the latent heat to the vapour phase. The investigation performed in this study suggests that the CO2 condensation in supersonic flows provides an efficient and eco-friendly way to mitigate the CO2 emissions to the environment.

K. M. Pang, M. Jangi, X. Bai, J. Schramm, J. H. Walther, and P. Glarborg, “Effects of ambient pressure on ignition and flame characteristics in diesel spray combustion,” Fuel, vol. 237, pp. 676–685, 2019. Publisher's VersionAbstract

This work reports on numerical investigation of effects of ambient pressure (Pam) on spray combustion under engine-like conditions. Three cases with different Pam of 42, 85 and 170 bar at a fixed ambient temperature of 1000 K are considered. Zero-dimensional calculations are first performed for autoignition of stagnant adiabatic homogenous mixtures to evaluate performance of the selected diesel surrogate fuel models and to identify the Pam effects on the most reactive mixture. An Eulerian-based transported probability density function model is then chosen for the three-dimensional computational fluid dynamics study. The results show the predicted ignition delay times and flame lift-off lengths are in reasonably good agreement with experiment, with the relative difference below 28%. The current work reveals that low-temperature reactions occur across a wide range of mixture fraction but a noticeable rise of temperature (>100 K above ambient temperature) is detected first on the fuel-lean side of the stoichiometric line in all three cases. The high-temperature ignition occurs first on the fuel-rich side in the 42 and 85 bar cases, where the igniting mixture appears to be more fuel-rich in the latter case. As Pam is further increased to 170 bar, the igniting mixture becomes more fuel-lean and the high-temperature ignition occurs on the fuel-lean side. The ignition behavior is found to depend on both physical and chemical processes. At 170 bar, the reaction rate increases and the associated transition from low- to high-temperature ignition is relatively fast, as compared to the transport of warmer products from the lean zone into the fuel-rich mixture. Also, within the fuel-rich region, the local temperature is low due to liquid fuel vaporization and the condition is not appropriate for ignition. These collectively cause the high-temperature ignition to occur on the fuel-lean side. Analyses on the quasi-steady spray flame structures reveal that, apart from poorer air entrainment due to reduced lift-off length, the higher rich-zone temperature and lower scalar dissipation rate also lead to a higher peak soot volume fraction at higher Pam.

S. S. Asadzadeh, P. S. Larsen, H. U. Riisgård, and J. H. Walther, “Hydrodynamics of the leucon sponge pump,” Journal of The Royal Society Interface, vol. 16, no. 150, pp. 20180630, 2019. Publisher's VersionAbstract
Leuconoid sponges are filter-feeders with a complex system of branching inhalant and exhalant canals leading to and from the close-packed choanocyte chambers. Each of these choanocyte chambers holds many choanocytes that act as pumping units delivering the relatively high pressure rise needed to overcome the system pressure losses in canals and constrictions. Here, we test the hypothesis that, in order to deliver the high pressures observed, each choanocyte operates as a leaky, positive displacement-type pump owing to the interaction between its beating flagellar vane and the collar, open at the base for inflow but sealed above. The leaking backflow is caused by small gaps between the vaned flagellum and the collar. The choanocyte pumps act in parallel, each delivering the same high pressure, because low-pressure and high-pressure zones in the choanocyte chamber are separated by a seal (secondary reticulum). A simple analytical model is derived for the pump characteristic, and by imposing an estimated system characteristic we obtain the back-pressure characteristic that shows good agreement with available experimental data. Computational fluid dynamics is used to verify a simple model for the dependence of leak flow through gaps in a conceptual collar–vane–flagellum system and then applied to models of a choanocyte tailored to the parameters of the freshwater demosponge Spongilla lacustris to study its flows in detail. It is found that both the impermeable glycocalyx mesh covering the upper part of the collar and the secondary reticulum are indispensable features for the choanocyte pump to deliver the observed high pressures. Finally, the mechanical pump power expended by the beating flagellum is compared with the useful (reversible) pumping power received by the water flow to arrive at a typical mechanical pump efficiency of about 70%.
S. S. Asadzadeh, et al., “Hydrodynamic functionality of the lorica in choanoflagellates,” Journal of The Royal Society Interface, vol. 16, no. 150, pp. 20180478, 2019. Publisher's VersionAbstract
Choanoflagellates are unicellular eukaryotes that are ubiquitous in aquatic habitats. They have a single flagellum that creates a flow toward a collar filter composed of filter strands that extend from the cell. In one common group, the loricate choanoflagellates, the cell is suspended in an elaborate basket-like structure, the lorica, the function of which remains unknown. Here, we use Computational Fluid Dynamics to explore the possible hydrodynamic function of the lorica. We use the choanoflagellate Diaphaoneca grandis as a model organism. It has been hypothesized that the function of the lorica is to prevent refiltration (flow recirculation) and to increase the drag and, hence, increase the feeding rate and reduce the swimming speed. We find no support for these hypotheses. On the contrary, motile prey are encountered at a much lower rate by the loricate organism. The presence of the lorica does not affect the average swimming speed, but it suppresses the lateral motion and rotation of the cell. Without the lorica, the cell jiggles from side to side while swimming. The unsteady flow generated by the beating flagellum causes reversed flow through the collar filter that may wash away captured prey while it is being transported to the cell body for engulfment. The lorica substantially decreases such flow, hence it potentially increases the capture efficiency. This may be the main adaptive value of the lorica.

2018

K. M. Pang, M. Jangi, X. Bai, J. Schramm, and J. H. Walther, “Modelling of diesel spray flames under engine-like conditions using an accelerated eulerian stochastic field method ,” Combustion and Flame, vol. 193, pp. 363–383, 2018. Publisher's VersionAbstract
This paper aims to simulate diesel spray flames across a wide range of engine-like conditions using the Eulerian Stochastic Field probability density function (ESF-PDF) model. The ESF model is coupled with the Chemistry Coordinate Mapping approach to expedite the calculation. A convergence study is carried out for a number of stochastic fields at five different conditions, covering both conventional diesel combustion and low-temperature combustion regimes. Ignition delay time, flame lift-off length as well as distributions of temperature and various combustion products are used to evaluate the performance of the model. The peak values of these properties generated using thirty-two stochastic fields are found to converge, with a maximum relative difference of 27% as compared to those from a greater number of stochastic fields. The ESF-PDF model with thirty-two stochastic fields performs reasonably well in reproducing the experimental flame development, ignition delay times and lift-off lengths. The ESF-PDF model also predicts a broader hydroxyl radical distribution which resembles the experimental observation, indicating that the turbulence–chemistry interaction is captured by the ESF-PDF model. The validated model is subsequently used to investigate the flame structures under different conditions. Analyses based on flame index and formaldehyde distribution suggest that a triple flame, which consists of a rich premixed flame, a diffusion flame and a lean premixed flame, is established in the earlier stage of the combustion. As the combustion progresses, the lean premixed flame weakens and diminishes with time. Eventually, only a double-flame structure, made up of the diffusion flame and the rich premixed flame, is observed. The analyses for various ambient temperatures show that the triple-flame structure remains for a longer period of time in cases with lower ambient temperatures. The present study shows that the ESF-PDF method is a valuable alternative to Lagrangian particle PDF methods.
N. K. Karna, A. R. Crisson, E. Wagemann, J. H. Walther, and H. A. Zambrano, “Effect of an external electric field on capillary filling of water in hydrophilic silica nanochannels,” Physical Chemistry Chemical Physics, vol. 20, no. 27, pp. 18262–18270, 2018. Publisher's VersionAbstract

Development of functional nanofluidic devices requires understanding the fundamentals of capillary driven flow in nanochannels. In this context, we conduct molecular dynamics simulations of water capillary imbibition in silica nanoslits under externally applied electric (E) fields with strengths between 0 and 1 V nm−1. For increasing E-fields, we observe a systematic lowering in the meniscus contact angle and a decrease in the corresponding water filling rates. These results contrast markedly the classical Washburn–Bosanquet's equation which predicts an increase in filling rates for lower water contact angles. Our study provides evidence that the observed decrease in water filling rates can be attributed to the interplay between two underlying mechanisms, a reduced fluidity of interfacial water and a systematic alignment of the water molecules in the bulk as a response to the particular strength of the applied E-field. Therefore, during water capillary filling a constant E-field applied in the direction parallel to the water imbibition leads to a lower than expected filling rate caused by a viscosity increase in the bulk and an altered solid–liquid friction on the channel walls. These coupled mechanisms governing capillarity under the action of applied E-fields could be manipulated for controlling imbibition of polar liquid solutions in nanofluidic devices.

N. Ramos-García, H. J. Spietz, J. N. Sørensen, and J. H. Walther, “Vortex simulations of wind turbines operating in atmospheric conditions using a prescribed velocity-vorticity boundary layer model,” Wind Energy, vol. 21, no. 11, pp. 1216–1231, 2018. Publisher's VersionAbstract
A prescribed velocity-vorticity boundary layer model for the vorticity transport equation is pro-posed, which corrects the unphysical upward deflection of the wake seen in a simpler prescribed velocity shear approach. A Lagrangian implementation of the boundary layer model has been investigated using our in-house vortex solver MIRAS. The MIRAS code contains both an aero-dynamic part and a structural-mechanical part taking into account aeroelastic phenomena. The solver is employed to simulate flows around wind turbines and uses a combination of filaments and particles in order to mimic the vorticity released by the wind turbine blades. The vorticity is interpolated onto a uniform Cartesian mesh, where the interaction is efficiently calculated by anfast Fourier transform-based method. Simulations of wind turbines operating in an atmospheric boundary layer floware carried out and analysed in detail for a range of scenarios. The manuscript focuses on studying the influence of wind shear and turbulence, which is varied to mimic natural atmospheric conditions. A traverse virtual probe up to 30 diameters downstream of the rotor plane is used to investigate the properties of the turbulent wake flow for the different cases.This includes mean and standard deviation of the streamwise velocity component, wake deficit,Reynolds stresses, and power spectral density of the velocity signal. The results show that combining a prescribed boundary layer approach with a vortex method gives consistent and physically correct results if properly implemented
J. Zavadlav, J. Sablić, R. Podgornik, and M. Praprotnik, “Open-boundary molecular dynamics of a DNA molecule in a hybrid explicit/implicit salt solution ,” Biophysical Journal, vol. 114, no. 10, pp. 2352–2362, 2018. Publisher's VersionAbstract
The composition and electrolyte concentration of the aqueous bathing environment have important consequences for many biological processes and can profoundly affect the behavior of biomolecules. Nevertheless, because of computational limitations, many molecular simulations of biophysical systems can be performed only at specific ionic conditions: either at nominally zero salt concentration, i.e., including only counterions enforcing the system’s electroneutrality, or at excessive salt concentrations. Here, we introduce an efficient molecular dynamics simulation approach for an atomistic DNA molecule at realistic physiological ionic conditions. The simulations are performed by employing the open-boundary molecular dynamics method that allows for simulation of open systems that can exchange mass and linear momentum with the environment. In our open-boundary molecular dynamics approach, the computational burden is drastically alleviated by embedding the DNA molecule in a mixed explicit/implicit salt-bathing solution. In the explicit domain, the water molecules and ions are both overtly present in the system, whereas in the implicit water domain, only the ions are explicitly present and the water is described as a continuous dielectric medium. Water molecules are inserted and deleted into/from the system in the intermediate buffer domain that acts as a water reservoir to the explicit domain, with both water molecules and ions free to enter or leave the explicit domain. Our approach is general and allows for efficient molecular simulations of biomolecules solvated in bathing salt solutions at any ionic strength condition.
H. J. Spietz, M. M. Hejlesen, and J. H. Walther, “A regularization method for solving the Poisson equation for mixed unbounded-periodic domains,” Journal of Computational Physics, vol. 356, pp. 439–447, 2018. Publisher's VersionAbstract

Regularized Green's functions for mixed unbounded-periodic domains are derived. The regularization of the Green's function removes its singularity by introducing a regularization radius which is related to the discretization length and hence imposes a minimum resolved scale. In this way the regularized unbounded-periodic Green's functions can be implemented in an FFT-based Poisson solver to obtain a convergence rate corresponding to the regularization order of the Green's function. The high order is achieved without any additional computational cost from the conventional FFT-based Poisson solver and enables the calculation of the derivative of the solution to the same high order by direct spectral differentiation. We illustrate an application of the FFT-based Poisson solver by using it with a vortex particle mesh method for the approximation of incompressible flow for a problem with a single periodic and two unbounded directions.

J. Zavadlav, S. J. Marrink, and M. Praprotnik, “Multiscale simulation of protein hydration using the SWINGER dynamical clustering algorithm,” Journal of Chemical Theory and Computation, vol. 14, no. 3, pp. 1754–1761, 2018. Publisher's VersionAbstract
To perform computationally efficient concurrent multiscale simulations of biological macromolecules in solution, where the all-atom (AT) models are coupled to supramolecular coarse-grained (SCG) solvent models, previous studies resorted to modified AT water models, such as the bundled-simple point charge (SPC) models, that use semiharmonic springs to restrict the relative movement of water molecules within a cluster. Those models can have a significant impact on the simulated biomolecules and can lead, for example, to a partial unfolding of a protein. In this work, we employ the recently developed alternative approach with a dynamical clustering algorithm, SWINGER, which enables a direct coupling of original unmodified AT and SCG water models. We perform an adaptive resolution molecular dynamics simulation of a Trp-Cage miniprotein in multiscale water, where the standard SPC water model is interfaced with the widely used MARTINI SCG model, and demonstrate that, compared to the corresponding full-blown AT simulations, the structural and dynamic properties of the solvated protein and surrounding solvent are well reproduced by our approach.
N. Karvounis, K. M. Pang, S. Mayer, and J. H. Walther, “Numerical simulation of condensation of sulfuric acid and water in a large two-stroke marine diesel engine,” Applied Energy, vol. 211, pp. 1009–1020, 2018. Publisher's VersionAbstract
In the present study, three-dimensional (3D) computational fluid dynamics simulations are performed to examine the process of sulfuric acid (H2SO4) and water (H2O) condensation in a large two-stroke marine diesel engine. A skeletal n-heptane chemical mechanism is coupled with a sulfur (S) subset to simulate the combustion process as well as the formation of sulfuric oxides (SOx) and H2SO4. The condensation process is simulated using a fluid film model which is coupled with the in-cylinder gas phase. Prior to the engine simulations, the fluid film condensation model is validated using the experimental data of sulfuric acid condensation rate in a laminar pipe flow. Next, the engine model is validated against the experimental sulfur dioxide (SO2) to sulfur trioxide (SO3) conversion obtained from the corresponding test engine. Both of the validation studies show a good agreement with the experimental data. The engine model is then utilized to simulate condensation for different operating conditions. The engine simulation results reveal that the fluid film has a significant effect on the total mass of sulfuric acid vapor and a marginal effect on the total mass of water vapor. A close to linear correlation is found between the fuel sulfur content and the total condensed mass of sulfuric acid. The level of humidity of the scavenging air does not affect the condensation of sulfuric acid considerably, relative to the humidity increase, but it has a high impact on water condensation. The study of the scavenging pressure level reveals a counter intuitive behavior where the condensation rates decrease with higher scavenging pressures due to the flow regime and flame size. Next, increasing the cylinder liner temperature decreases significantly the water condensation contrary to the sulfuric acid condensation which is marginally affected. The increase in lubricant film thickness results in a decrease for both the sulfuric acid and water condensation with a more pronounced reduction for water. Finally, a comparison between the high and low load operating conditions reveals a small drop in the total condensed mass of sulfuric acid and water for the low load conditions.
R. Podgornik, J. Zavadlav, and M. Praprotnik, “Molecular dynamics simulation of high density DNA arrays ,” Computation, vol. 6, no. 1, pp. 3, 2018. Publisher's VersionAbstract
Densely packed DNA arrays exhibit hexagonal and orthorhombic local packings, as well as a weakly first order transition between them. While we have some understanding of the interactions between DNA molecules in aqueous ionic solutions, the structural details of its ordered phases and the mechanism governing the respective phase transitions between them remains less well understood. Since at high DNA densities, i.e., small interaxial spacings, one can neither neglect the atomic details of the interacting macromolecular surfaces nor the atomic details of the intervening ionic solution, the atomistic resolution is a sine qua non to properly describe and analyze the interactions between DNA molecules. In fact, in order to properly understand the details of the observed osmotic equation of state, one needs to implement multiple levels of organization, spanning the range from the molecular order of DNA itself, the possible ordering of counterions, and then all the way to the induced molecular ordering of the aqueous solvent, all coupled together by electrostatic, steric, thermal and direct hydrogen-bonding interactions. Multiscale simulations therefore appear as singularly suited to connect the microscopic details of this system with its macroscopic thermodynamic behavior. We review the details of the simulation of dense atomistically resolved DNA arrays with different packing symmetries and the ensuing osmotic equation of state obtained by enclosing a DNA array in a monovalent salt and multivalent (spermidine) counterions within a solvent permeable membrane, mimicking the behavior of DNA arrays subjected to external osmotic stress. By varying the DNA density, the local packing symmetry, and the counterion type, we are able to analyze the osmotic equation of state together with the full structural characterization of the DNA subphase, the counterion distribution and the solvent structural order in terms of its different order parameters and consequently identify the most important contribution to the DNA-DNA interactions at high DNA densities.
E. Oyarzua, J. H. Walther, and H. A. Zambrano, “Water thermophoresis in carbon nanotubes: the interplay between thermophoretic and friction forces,” Physical Chemistry Chemical Physics, vol. 20, no. 5, pp. 3672–3677, 2018. Publisher's VersionAbstract
Thermophoresis is the phenomenon wherein particles experience a net drift induced by a thermal gradient. In this work, molecular dynamics simulations are conducted to study with atomistic detail the thermophoresis of water nanodroplets inside carbon nanotubes (CNTs) and its interplay with the retarding liquid–solid friction. Different applied temperatures, thermal gradients, and droplet sizes are used to reveal the dynamics of the two kinetic regimes of the thermophoretic motion in CNTs. The results indicate that during the droplet motion, the thermophoretic force is independent of the velocity of the droplet, whereas the magnitude of the retarding friction force exhibits a linear dependence. In fact, in the initial regime the magnitude of the friction force increases linearly with the droplet velocity, until the thermophoretic force is balanced by the friction force as the droplet reaches its terminal velocity in the final regime. In addition, an increase in the magnitude of the thermophoretic force is found for longer water droplets. These findings provide a deeper understanding of liquid transport driven by temperature gradients in nanoconfined geometries where liquid–solid interfaces govern fluidics.
J. C. Ong, K. M. Pang, J. H. Walther, J. Ho, and H. K. Ng, “Evaluation of a lagrangian soot tracking method for the prediction of primary soot particle size under engine-like conditions,” Journal of Aerosol Science, vol. 115, pp. 70–95, 2018. Publisher's VersionAbstract
This paper reports the implementation and evaluation of a Lagrangian soot tracking (LST) method for the modeling of soot in diesel engines. The LST model employed here has the tracking capability of a Lagrangian method and the ability to predict primary soot particle sizing. The Moss-Brookes soot model is used here as the Eulerian method to simulate soot formation and oxidation processes. The inception, surface growth and oxidation models are adopted and modified such that the associated reaction rates can be computed using the Lagrangian approach. The soot nuclei are treated as Lagrangian particles when the mass of incipient soot exceeds a designated threshold value. Their trajectories are then computed using the particle momentum equation. The change of primary soot particle size is dependent on the modified Lagrangian surface growth and soot oxidation models. Performance of the LST model in predicting temporal soot cloud development, mean soot diameter and primary soot size distribution is evaluated using measurements of n-heptane and n-dodecane spray combustion obtained under diesel engine-like conditions. In addition, sensitivity studies are carried out to investigate the influence of soot surface ageing and oxidation rates on the primary soot particle size distribution. With the use of surface ageing, the predicted maximum primary soot particle sizes are closer to the experimentally measured maximum primary soot sizes. Also, the associated particle size distribution shows a lognormal shape. A higher rate of soot oxidation due to OH causes the soot particles to be fully oxidized downstream of the flame. In general, the LST model performs better than the Eulerian method in terms of predicting soot sizing and accessing information of individual soot particles, both of which are shortcomings of the Eulerian method.
M. L. Szanyi, C. S. Hemmingsen, W. Yan, J. H. Walther, and S. L. Glimberg, “Near-wellbore modeling of a horizontal well with computational fluid dynamics ,” Journal of Petroleum Science and Engineering, vol. 160, pp. 119–128, 2018. Publisher's VersionAbstract
The oil production by horizontal wells is a complex phenomenon that involves flow through the porous reservoir, completion interface and the well itself. Conventional reservoir simulators can hardly resolve the flow through the completion into the wellbore. On the contrary, Computational Fluid Dynamics (CFD) is capable of modeling the complex interaction between the creeping reservoir flow and turbulent well flow for single phases, while capturing both the completion geometry and formation damage. A series of single phase steady-state simulations are undertaken, using such fully coupled three dimensional numerical models, to predict the inflow to the well. The present study considers the applicability of CFD for near-wellbore modeling through benchmark cases with available analytical solutions. Moreover, single phase steady-state numerical investigations are performed on a specific perforated horizontal well producing from the Siri field, offshore Denmark. The performance of the well is investigated with an emphasis on the inflow profile and the productivity index for different formation damage scenarios. A considerable redistribution of the inflow profile were found when the filtrate invasion extended beyond the tip of the perforations.

2017

E. Hovad, P. Larsen, J. Spangenberg, J. H. Walther, J. Thorborg, and J. H. Hattel, “Cavity prediction in sand mould production applying the DISAMATIC process,” Powder technology, vol. 321, pp. 204–217, 2017. Publisher's VersionAbstract

The sand shot in the DISAMATIC process is simulated by the discrete element method (DEM) taking into account the influence and coupling of the airflow with computational fluid dynamics (CFD). The DEM model is calibrated by a ring shear test, a sand pile experiment and a slump test. Subsequently, the DEM model is used to model the propagation of the green sand inside the mold chamber and the results are compared to experimental video footage. The chamber contains two cavities designed to quantify the deposited mass of green sand. The deposition of green sand in these two cavities is investigated with three cases of different air vent settings which control the ventilation of the chamber. These settings resulted in different air- and particle-velocities as well as different accumulated masses in the cavities, which were successfully simulated by the model.

C. K. Christiansen, J. H. Walther, P. Klit, and A. Vølund, “Investigation of journal orbit and flow pattern in a dynamically loaded journal bearing,” Tribology International, vol. 114, pp. 450–457, 2017. Publisher's VersionAbstract

A hydrodynamic journal bearing has been investigated using both the traditional two-dimensional (2D) Reynolds equation, and the full solution being the three-dimensional (3D) Navier-Stokes equations.

The two approaches are compared by performing an investigation of two inlet groove designs: the axial and the circumferential groove, respectively, on a bearing with length-to-diameter ratio of 0.5 exposed to a sinusoidal load pattern. Pressure distributions, journal orbits and frictional losses are compared. The modelling of grooves by pressure boundary conditions versus geometric conditions is examined. It is investigated if the presence of a groove increases frictional losses and the increase relates to groove dimensions. Furthermore, the influence of the groove design on the flow field is studied using the 3D solution.

J. Zavadlav and M. Praprotnik, “Adaptive resolution simulations coupling atomistic water to dissipative particle dynamics,” Journal of Chemical Physics, vol. 147, no. 11, pp. 114110, 2017. Publisher's VersionAbstract
Multiscale methods are the most efficient way to address the interlinked spatiotemporal scales encountered in soft matter and molecular liquids. In the literature reported hybrid approaches span from quantum to atomistic, coarse-grained, and continuum length scales. In this article, we present the hybrid coupling of the molecular dynamics (MD) and dissipative particle dynamics (DPD) methods, bridging the micro- and mesoscopic descriptions. The interfacing is performed within the adaptive resolution scheme (AdResS), which is a linear momentum conserving coupling technique. Our methodology is hence suitable to simulate fluids on the micro/mesoscopic scale, where hydrodynamics plays an important role. The presented approach is showcased for water at ambient conditions. The supramolecular coupling is enabled by a recently developed clustering algorithm SWINGER that assembles, disassembles, and reassembles clusters as needed during the course of the simulation. This allows for a seamless coupling between standard atomistic MD and DPD models. The developed framework can be readily applied to various applications in the fields of materials and life sciences, e.g., simulations of phospholipids and polymer melts, or to study the red blood cells behavior in normal and disease states.
I. Hanasaki and J. H. Walther, “Suspended particle transport through constriction channel with Brownian motion,” Physical Review E, vol. 96, no. 2, 2017. Publisher's VersionAbstract

It is well known that translocation events of a polymer or rod through pores or narrower parts of micro- and nanochannels have a stochastic nature due to the Brownian motion. However, it is not clear whether the objects of interest need to have a larger size than the entrance to exhibit the deviation from the dynamics of the surrounding fluid. We show by numerical analysis that the particle injection into the narrower part of the channel is affected by thermal fluctuation, where the particles have spherical symmetry and are smaller than the height of the constriction. The Péclet number (Pe) is the order parameter that governs the phenomena, which clarifies the spatio-temporal significance of Brownian motion compared to hydrodynamics. Furthermore, we find that there exists an optimal condition of Pe to attain the highest flow rate of particles relative to the dispersant fluid flow. Our finding is important in science and technology from nanopore DNA sequencers and lab-on-a-chip devices to filtration by porous materials and chromatography.

L. T. Nielsen, S. S. Asadzadeh, J. Dölger, J. H. Walther, T. Kiørboe, and A. Andersen, “Hydrodynamics of microbial filter feeding ,” Proceedings of the National Academy of Sciences (PNAS), vol. 114, no. 35, pp. 9373–9378, 2017. Publisher's VersionAbstract

Microbial filter feeders are an important group of grazers, significant to the microbial loop, aquatic food webs, and biogeochemical cycling. Our understanding of microbial filter feeding is poor, and, importantly, it is unknown what force microbial filter feeders must generate to process adequate amounts of water. Also, the trade-off in the filter spacing remains unexplored, despite its simple formulation: A filter too coarse will allow suitably sized prey to pass unintercepted, whereas a filter too fine will cause strong flow resistance. We quantify the feeding flow of the filter-feeding choanoflagellate Diaphanoeca grandis using particle tracking, and demonstrate that the current understanding of microbial filter feeding is inconsistent with computational fluid dynamics (CFD) and analytical estimates. Both approaches underestimate observed filtration rates by more than an order of magnitude; the beating flagellum is simply unable to draw enough water through the fine filter. We find similar discrepancies for other choanoflagellate species, highlighting an apparent paradox. Our observations motivate us to suggest a radically different filtration mechanism that requires a flagellar vane (sheet), something notoriously difficult to visualize but sporadically observed in the related choanocytes (sponges). A CFD model with a flagellar vane correctly predicts the filtration rate of D. grandis, and using a simple model we can account for the filtration rates of other microbial filter feeders. We finally predict how optimum filter mesh size increases with cell size in microbial filter feeders, a prediction that accords very well with observations. We expect our results to be of significance for small-scale biophysics and trait-based ecological modeling.

L. Fu, S. Litvinov, X. Y. Hu, and N. A. Adams, “A novel partitioning method for block-structured adaptive meshes,” Journal of Computational Physics, vol. 341, pp. 447–473, 2017. Publisher's VersionAbstract

We propose a novel partitioning method for block-structured adaptive meshes utilizing the meshless Lagrangian particle concept. With the observation that an optimum partitioning has high analogy to the relaxation of a multi-phase fluid to steady state, physically motivated model equations are developed to characterize the background mesh topology and are solved by multi-phase smoothed-particle hydrodynamics. In contrast to well established partitioning approaches, all optimization objectives are implicitly incorporated and achieved during the particle relaxation to stationary state. Distinct partitioning sub-domains are represented by colored particles and separated by a sharp interface with a surface tension model. In order to obtain the particle relaxation, special viscous and skin friction models, coupled with a tailored time integration algorithm are proposed. Numerical experiments show that the present method has several important properties: generation of approximately equal-sized partitions without dependence on the mesh-element type, optimized interface communication between distinct partitioning sub-domains, continuous domain decomposition which is physically localized and implicitly incremental. Therefore it is particularly suitable for load-balancing of high-performance CFD simulations.

    N. Ramos-García, M. M. Hejlesen, J. N. Sørensen, and J. H. Walther, “Hybrid vortex simulations of wind turbines using a three-dimensional viscous-inviscid panel method,” Wind Energy, vol. 20, no. 11, pp. 1871–1889, 2017. Publisher's VersionAbstract
    A hybrid filament-mesh vortex method is proposed and validated to predict the aerodynamic performance of wind turbine rotors and to simulate the resulting wake. Its novelty consists of using a hybrid method to accurately simulate the wake down stream of the wind turbine while reducing the computational time used by the method. The proposed method uses a hybrid approach, where the near wake is resolved by using vortex filaments, which carry the vorticity shed by the trailing edge of the blades. The interaction of the vortex filaments in the near vicinity of the wind turbine is evaluated using a direct calculation, whereas the contribution from the large downstream wake is calculated using a mesh-based method. The hybrid method is first validated in detail against the well-known MEXICO experiment, using the direct filament method asa comparison. The second part of the validation includes a study of the influence of the time-integration scheme used for evolving the wake in time, aeroelastic simulations of the National Renewable Energy Laboratory 5 MW wind turbine and an analysis of the central processing unit time showing the gains of using the hybrid filament-mesh method. Copyright ©2017 John Wiley & Sons, Ltd.
    K. M. Pang, N. Karvounis, J. H. Walther, J. Schramm, P. Glarborg, and S. Mayer, “Modelling of temporal and spatial evolution of sulphur oxides and sulphuric acid under large, two-stroke marine engine-like conditions using integrated CFD-chemical kinetics ,” Applied Energy, vol. 193, pp. 60–73, 2017. Publisher's VersionAbstract

    In this work, three-dimensional computational fluid dynamics (CFD) studies of sulphur oxides (SOx) and sulphuric acid (H2SO4) formation processes in a large, low speed two-stroke marine diesel engine are carried out. The current numerical study aims to investigate the conversion of sulphuric dioxide (SO2) to sulphuric trioxide (SO3) and the possibility of H2SO4 condensation which are the prerequisites to better understand the corrosion-induced wear phenomenon. This is achieved with the aid of the implementation of a multicomponent surrogate model, which comprises a skeletal n-heptane mechanism and a reduced sulphur subset mechanism. In the present work, performance of the coupled CFD-chemical kinetic model is evaluated using both qualitative and quantitative methods. The modelling results show that the temporal and spatial evolutions of SOx predicted by the skeletal model are similar to those by the base mechanism. Predictions of the variations of SOx and the associated SO2 to SO3 conversion in response to the change of fuel sulphur content, swirl velocity, start of injection, scavenge pressure and humidity qualitatively agree with numerical and experimental results from the literature. The model is further evaluated using the measured SO2 to SO3 conversion levels in a low load, low scavenge pressure case and a low load, high scavenge pressure case. The absolute values of simulated and measured conversion levels are close, although the former appear to be higher. The current results show that the flame impinges at the cylinder liner near top dead centre. The gas is cooled rapidly by the wall temperature and H2SO4 is produced in the region where the local temperature is less than 600 K. Based on the flue gas correlation, the acid dew point temperature is higher than the wall temperature, suggesting that acid condensation may begin early at the top part of the cylinder liner. The predicted distribution corresponds well with the distribution of corroded parts observed in service engines. The model is expected to serve as an important tool to simulate the rates of SO2 absorption into lubricating oil film and H2SO4 condensation in this combustion system.

    H. J. Spietz, M. M. Hejlesen, and J. H. Walther, “Iterative Brinkman penalization for simulation of impulsively started flow past a sphere and a circular disc,” Journal of Computational Physics, vol. 336, pp. 261–274, 2017. Publisher's VersionAbstract
    We present a Brinkman penalization method for three-dimensional (3D) flows using particle vortex methods, improving the existing technique by means of an iterative process. We perform simulations to study the impulsively started flow past a sphere at Re = 1000 and normal to a circular disc at Re = 500. The simulation results obtained for the flow past a sphere are found in qualitative good agreement with previously published results obtained using respectively a 3D vortex penalization method and a 3D vortex method combined with an accurate boundary element method. From the results obtained for the flow normal to a circular disc it is found that the iterative method enables the use of a time step that is one order of magnitude larger than required by the standard non-iterative Brinkman penalization method.
    Y. Yang, J. H. Walther, Y. Yan, and C. Wen, “CFD modeling of condensation process of water vapor in supersonic flows,” Applied Thermal Engineering, vol. 115, pp. 1357–1362, 2017. Publisher's VersionAbstract

    The condensation phenomenon of vapor plays an important role in various industries, such as the steam flow in turbines and refrigeration system. A mathematical model is developed to predict the spontaneous condensing phenomenon in the supersonic flows using the nucleation and droplet growth theories. The numerical approach is validated with the experimental data, which shows a good agreement between them. The condensation characteristics of water vapor in the Laval nozzle are described in detail. The results show that the condensation process is a rapid variation of the vapor-liquid phase change both in the space and in time. The spontaneous condensation of water vapor will not appear immediately when the steam reaches the saturation state. Instead, it occurs further downstream the nozzle throat, where the steam is in the state of supersaturation.

    E. Wagemann, E. Oyarzua, J. H. Walther, and H. A. Zambrano, “Slip divergence of water flow in graphene nanochannels: the role of chirality,” Physical Chemistry Chemical Physics, vol. 19, no. 13, pp. 8646–8652, 2017. Publisher's VersionAbstract

    Graphene has attracted considerable attention due to its characteristics as a 2D material and its fascinating properties, providing a potential building block for nanofabrication. In nanochannels the solid–liquid interface plays a non-negligible role in determining the fluid dynamics. Therefore, for an optimal design of nanofluidic devices, a comprehensive understanding of the slippage in a water flow confined between graphene walls is important. In nanoconfinement, experimental and computational studies have found the slip length to increase nonlinearly when the shear rate is larger than a critical value. Here, by conducting molecular dynamics simulations, we study the influence of the graphene crystallographic orientation on the slip boundary conditions inside a nanoslit channel. The flow in channels with heights of 2.0, 2.4 and 2.8 nm is driven parallel to the zig-zag and arm-chair crystallographic directions. We extract flow rates, velocity profiles, slip velocities and slip lengths. The slip velocity displays a linear relationship to the shear stress up to a critical value, which is not size dependent. Moreover, the slip length is found to be shear stress dependent above a critical shear stress value of 0.4 MPa. Furthermore, our results indicate that after this critical shear stress is reached, the flow rates are significantly influenced (up to 10%) by the particular orientation of the graphene topology.

    U. Rasthofer and V. Gravemeier, “Recent developments in variational multiscale methods for large-eddy simulation of turbulent flow ,” Archives of Computational Methods in Engineering, vol. 25, pp. 647–690, 2017. Publisher's VersionAbstract

    The variational multiscale method is reviewed as a framework for developing computational methods for large-eddy simulation of turbulent flow. In contrast to other articles reviewing this topic, which focused on large-eddy simulation of turbulent incompressible flow, this study covers further aspects of numerically simulating turbulent flow as well as applications beyond incompressible single-phase flow. The various concepts for subgrid-scale modeling within the variational multiscale method for large-eddy simulation proposed by researchers in this field to date are illustrated. These conceptions comprise (i) implicit large-eddy simulation, represented by residual-based and stabilized methods, (ii) functional subgrid-scale modeling via small-scale subgrid-viscosity models and (iii) structural subgrid-scale modeling via the introduction of multifractal subgrid scales. An overview on exemplary numerical test cases to which the reviewed methods have been applied in the past years is provided, including explicit computational results obtained from turbulent channel flow. Wall-layer modeling, passive and active scalar transport as well as developments for large-eddy simulation of turbulent two-phase flow and combustion are discussed to complete this exposition.

    J. J. Olsen, C. S. Hemmingsen, L. Bergmann, K. K. Nielsen, S. L. Glimberg, and J. H. Walther, “Characterization and erosion modeling of a nozzle-based inflow-control device,” Society of Petroleum Engineers Drill & Completion, vol. 32, no. 4, pp. 224-233, 2017. Publisher's VersionAbstract

    In the petroleum industry, water-and-gas breakthrough in hydrocarbon reservoirs is a common issue that eventually leads to uneconomic production. To extend the economic production lifetime, inflow-control devices (ICDs) are designed to delay the water-and-gas breakthrough. Because the lifetime of a hydrocarbon reservoir commonly exceeds 20 years and it is a harsh environment, the reliability of the ICDs is vital.

    With computational fluid dynamics (CFD), an inclined nozzle-based ICD is characterized in terms of the Reynolds number, discharge coefficient, and geometric variations. The analysis shows that especially the nozzle edges affect the ICD flow characteristics. To apply the results, an equation for the discharge coefficient is proposed.

    The Lagrangian particle approach is used to further investigate the ICD. This allows for erosion modeling by injecting sand particles into the system. By altering the geometry and modeling several scenarios while analyzing the erosion in the nozzles and at the nozzle edges, an optimized design for incompressible media is found. With a filleted design and an erosion-resistant material, the mean erosion rate in the nozzles may be reduced by a factor of more than 2,500.

    A. Andersen, T. Bohr, T. Schnipper, and J. H. Walther, “Wake structure and thrust generation of a flapping foil in two-dimensional flow,” Journal of Fluid Mechanics, vol. 812, 2017. Publisher's VersionAbstract

    We present a combined numerical (particle vortex method) and experimental (soap film tunnel) study of a symmetric foil undergoing prescribed oscillations in a two-dimensional free stream. We explore pure pitching and pure heaving, and contrast these two generic types of kinematics. We compare measurements and simulations when the foil is forced with pitching oscillations, and we find a close correspondence between flow visualisations using thickness variations in the soap film and the numerically determined vortex structures. Numerically, we determine wake maps spanned by oscillation frequency and amplitude, and we find qualitatively similar maps for pitching and heaving. We determine the drag–thrust transition for both pitching and heaving numerically, and we discuss it in relation to changes in wake structure. For heaving with low oscillation frequency and high amplitude, we find that the drag–thrust transition occurs in a parameter region with wakes in which two vortex pairs are formed per oscillation period, in contrast to the common transition scenario in regions with inverted von Kármán wakes.

    D. Kim, C. Bowman, J. D. T. Bonis-O’Donnell, A. Matzavinos, and D. Stein, “Giant acceleration of DNA diffusion in an array of entropic barriers,” Physical Review Letters, vol. 118, no. 4, 2017. Publisher's VersionAbstract

    We investigate with experiments and computer simulations the nonequilibrium dynamics of DNA polymers crossing arrays of entropic barriers in nanofluidic devices in a pressure-driven flow. With increasing driving pressure, the effective diffusivity of DNA rises and then peaks at a value that is many times higher than the equilibrium diffusivity. This is an entropic manifestation of “giant acceleration of diffusion.” The phenomenon is sensitive to the effective energy landscape; thus, it offers a unique probe of entropic barriers in a system driven away from equilibrium.

    2016

    M. M. Hejlesen and J. H. Walther, “A multiresolution method for solving the poisson equation using high order regularization,” Journal of Computational Physics, vol. 326, pp. 188–196, 2016. Publisher's VersionAbstract

    We present a novel high order multiresolution Poisson solver based on regularized Green's function solutions to obtain exact free-space boundary conditions while using fast Fourier transforms for computational efficiency. Multiresolution is a achieved through local refinement patches and regularized Green's functions corresponding to the difference in the spatial resolution between the patches. The full solution is obtained utilizing the linearity of the Poisson equation enabling super-position of solutions. We show that the multiresolution Poisson solver produces convergence rates that correspond to the regularization order of the derived Green's functions.

    E. Hovad, J. Spangenberg, P. Larsen, J. H. Walther, J. Thorborg, and J. H. Hattel, “Simulating the DISAMATIC process using the discrete element method — a dynamical study of granular flow,” Powder Technology, vol. 303, pp. 228–240, 2016. Publisher's VersionAbstract
    The discrete element method (DEM) is applied to simulate the dynamics of the flow of green sand while filling a mould using the DISAMATIC process. The focus is to identify relevant physical experiments that can be used to characterize the material properties of green sand in the numerical model. The DEM parameters describing the static friction coefficients are obtained using a ring shear tester and the rolling resistance and cohesion value is subsequently calibrated with a sand pile experiment. The calibrated DEM model is used to model the sand shot in the DISAMATIC process for three different sand particle flow rates as captured on the corresponding video footage of the interior of the chamber. A mould chamber with three ribs mounted on the fixed pattern plate forming four cavities is chosen as a reference geometry to investigate the conditions found in the real moulding process. The geometry of the cast part and the casting system can make the moulding process complicated due to obstacles such as ribs that deflect the sand flow causing “shadows effects” around the cavities of the mould. These dynamic effects are investigated by the qualitative flow dynamics and quantitative mould filling times captured in the video footage and simulated by the calibrated DEM model. Both two- and three-dimensional DEM models are considered and found to produce results in good agreements with the video footage of the DISAMATIC process.
    C. S. Hemmingsen, K. M. Ingvorsen, S. Mayer, and J. H. Walther, “LES and URANS simulations of the swirling flow in a dynamic model of a uniflow-scavenged cylinder,” International Journal of Heat and Fluid Flow, vol. 62, pp. 213–223, 2016. Publisher's VersionAbstract
    The turbulent swirling flow in a uniflow-scavenged two-stroke engine cylinder is investigated using computational fluid dynamics. The investigation is based on the flow in a scale model with a moving piston. Two numerical approaches are tested; a large eddy simulation (LES) approach with the wall-adaptive local eddy-viscosity (WALE) model and a Reynolds-Averaged Navier-Stokes approach using the k - w Shear-Stress Transport model. Combustion and compression are neglected. The simulations are verified by a sensitivity study and the performance of the turbulence models are evaluated by comparison with experimental results. Both turbulence models produce results in good agreement with experimental data. The agreement is particularly good for the LES, immediately after the piston passes the bottom dead center. Furthermore, in the piston standstill period, the LES predicts a tangential profile in agreement with the measurements, whereas the k - w SST model predicts a solid body rotation. Several instabilities are identified during the scavenging process. The formation of a vortex breakdown with multiple helical vortex structures are observed after the scavenge port opening, along with the shedding of vortex rings with superimposed swirl. The turbulence models predict several flow reversals in the vortex breakdown region through the scavenge process. Flow separations in the scavenge ports lead to a secondary axial flow, in the separated region. The secondary flow exits in the top of the scavenge ports, resulting in large velocity gradients near the cylinder liner above the scavenge ports.
    C. Wen, Y. Yang, J. H. Walther, K. M. Pang, and Y. Feng, “Effect of delta wing on the particle flow in a novel gas supersonic separator,” Powder Technology, vol. 304, pp. 261–267, 2016. Publisher's VersionAbstract
    The present work presents numerical simulations of the complex particle motion in a supersonic separator with a delta wing located in the supersonic flow. The effect of the delta wing on the strong swirling flow is analysed using the Discrete Particle Method. The results show that the delta wings re-compress the upstream flow and the gas Mach number decreases correspondingly. However, the Mach number does not vary significantly from the small, medium and large delta wing configurations. The small delta wing generates a swirl near its surface, but has minor influences on the flow above it. On the contrary, the use of the large delta wing produces a strong swirling flow in the whole downstream region. For the large delta wing, the collection efficiency reaches 70% with 2 μm particles, indicating a good separation performance of the proposed supersonic separator.
    N. K. Karna, E. Oyarzua, J. H. Walther, and H. A. Zambrano, “Effect of the meniscus contact angle during early regimes of spontaneous imbibition in nanochannels,” Physical Chemistry Chemical Physics, vol. 18, no. 47, pp. 31997–32001, 2016. Publisher's VersionAbstract

    Nanoscale capillarity has been extensively investigated; nevertheless, many fundamental questions remain open. In spontaneous imbibition, the classical Lucas–Washburn equation predicts a singularity as the fluid enters the channel consisting of an anomalous infinite velocity of the capillary meniscus. Bosanquet's equation overcomes this problem by taking into account fluid inertia predicting an initial imbibition regime with constant velocity. Nevertheless, the initial constant velocity as predicted by Bosanquet's equation is much greater than those observed experimentally. In the present study, large scale atomistic simulations are conducted to investigate capillary imbibition of water in slit silica nanochannels with heights between 4 and 18 nm. We find that the meniscus contact angle remains constant during the inertial regime and its value depends on the height of the channel. We also find that the meniscus velocity computed at the channel entrance is related to the particular value of the meniscus contact angle. Moreover, during the subsequent visco-inertial regime, as the influence of viscosity increases, the meniscus contact angle is found to be time dependent for all the channels under study. Furthermore, we propose an expression for the time evolution of the dynamic contact angle in nanochannels which, when incorporated into Bosanquet's equation, satisfactorily explains the initial capillary rise.

    C. Wen, A. Li, J. H. Walther, and Y. Yang, “Effect of swirling device on flow behavior in a supersonic separator for natural gas dehydration,” Separation and Purification Technology, vol. 168, pp. 68–73, 2016. Publisher's VersionAbstract
    The supersonic separator is a revolutionary device to remove the condensable components from gas mixtures. One of the key issues for this novel technology is the complex supersonic swirling flow that is not well understood. A swirling device composed of an ellipsoid and several helical blades is designed for an annular supersonic separator. The supersonic swirling separation flow of natural gas is calculated using the Reynolds Stress model. The results show that the viscous heating and strong swirling flow cause the adverse pressure in the annular channel, which may negatively affect the separation performance. When the swirling flow passes through the annular nozzle, it will damage the expansion characteristics of the annular nozzle. The blade angles and numbers are both optimized by evaluating the swirling and expansion effects for the supersonic separation.
    M. Zayernouri and A. Matzavinos, “Fractional adams–bashforth/moulton methods: an application to the fractional keller–segel chemotaxis system,” Journal of Computational Physics, vol. 317, pp. 1–14, 2016. Publisher's VersionAbstract
    We first formulate a fractional class of explicit Adams–Bashforth (A-B) and implicit Adams–Moulton (A-M) methods of first- and second-order accuracy for the time-integration of Dtτ0Cu(x,t)=g(t;u), τ∈(0,1], where Dtτ0C denotes the fractional derivative in the Caputo sense. In this fractional setting and in contrast to the standard Adams methods, an extra history load term emerges and the associated weight coefficients are τ-dependent. However when τ=1, the developed schemes reduce to the well-known A-B and A-M methods with standard coefficients. Hence, in terms of scientific computing, our approach constitutes a minimal modification of the existing Adams libraries. Next, we develop an implicit–explicit (IMEX) splitting scheme for linear and nonlinear fractional PDEs of a general advection–reaction–diffusion type, and we apply our scheme to the time–space fractional Keller–Segel chemotaxis system. In this context, we evaluate the nonlinear advection term explicitly, employing the fractional A-B method in the prediction step, and we treat the corresponding diffusion term implicitly in the correction step using the fractional A-M scheme. Moreover, we perform the corresponding spatial discretization by employing an efficient and spectrally-accurate fractional spectral collocation method. Our numerical experiments exhibit the efficiency of the proposed IMEX scheme in solving nonlinear fractional PDEs.
    K. M. Pang, N. Karvounis, J. H. Walther, and J. Schramm, “Numerical investigation of soot formation and oxidation processes under large two-stroke marine diesel engine-like conditions using integrated CFD-chemical kinetics,” Applied Energy, vol. 169, pp. 874–887, 2016. Publisher's VersionAbstract
    In this reported work, multi-dimensional computational fluid dynamics studies of diesel combustion and soot formation processes in a constant volume combustion chamber and a marine diesel engine are carried out. The key interest here is firstly to validate the coupling of a newly developed skeletal n-heptane mechanism and a revised multi-step soot model using laser extinction measurements of diesel soot obtained at different ambient pressure levels in an optical accessible, constant volume chamber experiment. It is revealed that ignition delay times and liftoff lengths generated using the new skeletal model are close to those produced by the larger and more comprehensive chemical mechanisms, apart from those at the low pressure condition. The current study also demonstrates that the variation of averaged soot volume fraction with respect to the change of combustion chamber pressure captured using the revised soot model agrees reasonably well with the measurements in terms of peak values. The numerical model is subsequently applied to investigate the flame development, soot/nitrogen monoxide formation and heat transfer in a two-stroke, low-speed uniflow-scavenged marine diesel engine operating at full load condition, where optical measurements are not available. Comparisons to the experimental data show that the simulated pressure rise starts 1.0 crank angle degree in advance and the calculated peak pressure is 1.7% lower. The associated flame liftoff length is negligible, yielding higher local equivalence ratio and soot volume fraction values as compared to those under similar test condition in the constant volume chamber. With the use of the revised model, the total heat transfer to the walls calculated when soot radiative heat loss is taken into account is approximately 30% higher compared to that when only convective heat loss is considered. The averaged nitrogen monoxide concentration is 7.7% lower when both convective and soot radiative heat losses are accounted for but the net soot mass production is less sensitive to soot radiation. A sensitivity study reveals that neither increasing nor decreasing the soot absorption coefficient by 30% from the baseline setup is influential to nitrogen monoxide formation, soot mass production and heat transfer. The findings here aid to gain insights and provide a better understanding of the combustion and soot processes in large, uniflow-scavenged marine engines. The numerical model developed in this work can also be applied to explore different phenomena in this combustion system.
    S. Mishra, C. Schwab, and J. Šukys, “Multi-level Monte Carlo finite volume methods for uncertainty quantification of acoustic wave propagation in random heterogeneous layered medium,” Journal of Computational Physics, vol. 312, pp. 192–217, 2016. Publisher's VersionAbstract

    We consider the very challenging problem of efficient uncertainty quantification for acoustic wave propagation in a highly heterogeneous, possibly layered, random medium, characterized by possibly anisotropic, piecewise log-exponentially distributed Gaussian random fields. A multi-level Monte Carlo finite volume method is proposed, along with a novel, bias-free upscaling technique that allows to represent the input random fields, generated using spectral FFT methods, efficiently. Combined together with a recently developed dynamic load balancing algorithm that scales to massively parallel computing architectures, the proposed method is able to robustly compute uncertainty for highly realistic random subsurface formations that can contain a very high number (millions) of sources of uncertainty. Numerical experiments, in both two and three space dimensions, illustrating the efficiency of the method are presented.

    B. O. Andersen, N. F. Nielsen, and J. H. Walther, “Numerical and experimental study of pulse-jet cleaning in fabric filters,” Powder Technology, vol. 291, pp. 284–298, 2016. Publisher's VersionAbstract
    Pulse-jet cleaning and understanding of the complex physics are essential when designing fabric filters used for air pollution control. Today, low-pressure cleaning is of particular interest due to demand for reduced compressed air consumption. Pulse-jet cleaned fabric filters have been studied for many years by experimental investigation and to a limited extent by Computational Fluid Dynamics (CFD). The majority of the studies have focused on high-pressure cleaning systems, and the CFD models presented are so far two-dimensional (2D). In the work presented here, pulse-jet cleaning of low-pressure fabric filters (2 bar) is studied using a full three-dimensional (3D) CFD model. Experimental results obtained in a pilot-scale test filter with 28 bags, in length of 10 m and in general full-scale dimensions of the cleaning system are used to verify the reliability of the present CFD model. The validated CFD model reveals the strong compressible effects, a highly transient behaviour, the formation of compressible vortex rings and the shock cell phenomenon within the overexpanded supersonic jet. The cleaning nozzles and venturi design aid or oppose the pulse-pressure within the bags, and this plays an important role in the resulting efficiency of removing the dust layer from the bags. The CFD simulation shows that the traditional straight-bore nozzles provide substantial misalignment of the jet, and the add-on nozzle design offers only limited improvement. Further, the need for venturis in low-pressure filters and the importance of optimising the venturi design are demonstrated. The working principle of the venturi is to restrict backflow which is detrimental to the pressure rise in the bags. Reducing the venturi throat diameter is shown to reduce backflow and improve the pulse-pressure.
    S. Litvinov, Q. Xie, X. Hu, N. Adams, and M. Ellero, “Simulation of individual polymer chains and polymer solutions with smoothed dissipative particle dynamics,” Fluids, vol. 1, no. 1, pp. 7, 2016. Publisher's VersionAbstract
    In an earlier work (Litvinov et al., Phys.Rev.E 77, 066703 (2008)), a model for a polymer molecule in solution based on the smoothed dissipative particle dynamics method (SDPD) has been presented. In the present paper, we show that the model can be extended to three-dimensional situations and simulate effectively diluted and concentrated polymer solutions. For an isolated suspended polymer, calculated static and dynamic properties agree well with previous numerical studies and theoretical predictions based on the Zimm model. This implies that hydrodynamic interactions are fully developed and correctly reproduced under the current simulated conditions. Simulations of polymer solutions and melts are also performed using a reverse Poiseuille flow setup. The resulting steady rheological properties (viscosity, normal stress coefficients) are extracted from the simulations and the results are compared with the previous numerical studies, showing good results.
    D. Azarnykh, S. Litvinov, X. Bian, and N. A. Adams, “Determination of macroscopic transport coefficients of a dissipative particle dynamics solvent,” Physical Review E, vol. 93, no. 1, 2016. Publisher's VersionAbstract
    We present an approach to determine macroscopic transport coefficients of a dissipative particle dynamics (DPD) solvent. Shear viscosity, isothermal speed of sound, and bulk viscosity result from DPD-model input parameters and can be determined only a posteriori. For this reason approximate predictions of these quantities are desirable in order to set appropriate DPD input parameters. For the purpose of deriving an improved approximate prediction we analyze the autocorrelation of shear and longitudinal modes in Fourier space of a DPD solvent for Kolmogorov flow. We propose a fitting function with nonexponential properties which gives a good approximation to these autocorrelation functions. Given this fitting function we improve significantly the capability of a priori determination of macroscopic solvent transport coefficients in comparison to previously used exponential fitting functions.
    N. Karathanasopoulos and P. Angelikopoulos, “Optimal structural arrangements of multilayer helical assemblies,” International Journal of Solids and Structures, vol. 78-79, pp. 1–8, 2016. Publisher's VersionAbstract

    We report a quantitative framework to guide the braiding pattern design of multilayer helical assemblies. We optimize the structural pattern so as to maximize the construction’s resistance to axial loads and concurrently minimize its torsional propensity. To that extent, we consider helical assemblies comprised of up to five layers, for which we identify favorable structural patterns, providing a database that covers most practical applications.

    2015

    C. Voglis, P. E. Hadjidoukas, K. E. Parsopoulos, D. G. Papageorgiou, I. E. Lagaris, and M. N. Vrahatis, “P-MEMPSODE: parallel and irregular memetic global optimization,” Computer Physics Communications, vol. 197, pp. 190–211, 2015. Publisher's VersionAbstract
    A parallel memetic global optimization algorithm suitable for shared memory multicore systems is proposed and analyzed. The considered algorithm combines two well-known and widely used population-based stochastic algorithms, namely Particle Swarm Optimization and Differential Evolution, with two efficient and parallelizable local search procedures. The sequential version of the algorithm was first introduced as MEMPSODE (MEMetic Particle Swarm Optimization and Differential Evolution) and published in the CPC program library. We exploit the inherent and highly irregular parallelism of the memetic global optimization algorithm by means of a dynamic and multilevel approach based on the OpenMP tasking model. In our case, tasks correspond to local optimization procedures or simple function evaluations. Parallelization occurs at each iteration step of the memetic algorithm without affecting its searching efficiency. The proposed implementation, for the same random seed, reaches the same solution irrespectively of being executed sequentially or in parallel. Extensive experimental evaluation has been performed in order to illustrate the speedup achieved on a shared-memory multicore server.
    M. M. Hejlesen, J. T. Rasmussen, P. Chatelain, and J. H. Walther, “High order poisson solver for unbounded flows,” Procedia IUTAM, vol. 18, pp. 56–65, 2015. Publisher's VersionAbstract
    This paper presents a high order method for solving the unbounded Poisson equation on a regular mesh using a Green's function solution. The high order convergence was achieved by formulating mollified integration kernels, that were derived from a filter regularisation of the solution field. The method was implemented on a rectangular domain using fast Fourier transforms (FFT) to increase computational efficiency. The Poisson solver was extended to directly solve the derivatives of the solution. This is achieved either by including the differential operator in the integration kernel or by performing the differentiation as a multiplication of the Fourier coefficients. In this way, differential operators such as the divergence or curl of the solution field could be solved to the same high order convergence without additional computational effort. The method was applied and validated using the equations of fluid mechanics as an example, but can be used in many physical problems to solve the Poisson equation on a rectangular unbounded domain. For the two-dimensional case we propose an infinitely smooth test function which allows for arbitrary high order convergence. Using Gaussian smoothing as regularisation we document an increased convergence rate up to tenth order. The method however, can easily be extended well beyond the tenth order. To show the full extend of the method we present the special case of a spectrally ideal regularisation of the velocity formulated integration kernel, which achieves an optimal rate of convergence.
    M. M. Hejlesen, J. T. Rasmussen, A. Larsen, and J. H. Walther, “On estimating the aerodynamic admittance of bridge sections by a mesh-free vortex method,” Journal of Wind Engineering and Industrial Aerodynamics, vol. 146, pp. 117–127, 2015. Publisher's VersionAbstract
    A stochastic method of generating a synthetic turbulent flow field is combined with a 2D mesh-free vortex method to simulate the effect of an oncoming turbulent flow on a bridge deck cross-section within the atmospheric boundary layer. The mesh-free vortex method is found to be capable of preserving the a priori specified statistics as well as anisotropic characteristics of the synthesised turbulent flow field. From the simulation, the aerodynamic admittance is estimated and the instantaneous effect of a time varying angle of attack is briefly investigated. The obtained aerodynamic admittance of four aerodynamically different bridge sections is compared to available wind tunnel data, showing good agreement between the two.
    E. Oyarzua, J. H. Walther, A. Mejía, and H. A. Zambrano, “Early regimes of water capillary flow in slit silica nanochannels,” Physical Chemistry Chemical Physics, vol. 17, no. 22, pp. 14731–14739, 2015. Publisher's VersionAbstract
    Molecular dynamics simulations are conducted to investigate the initial stages of spontaneous imbibition of water in slit silica nanochannels surrounded by air. An analysis is performed for the effects of nanoscopic confinement, initial conditions of liquid uptake and air pressurization on the dynamics of capillary filling. The results indicate that the nanoscale imbibition process is divided into three main flow regimes: an initial regime where the capillary force is balanced only by the inertial drag and characterized by a constant velocity and a plug flow profile. In this regime, the meniscus formation process plays a central role in the imbibition rate. Thereafter, a transitional regime takes place, in which, the force balance has significant contributions from both inertia and viscous friction. Subsequently, a regime wherein viscous forces dominate the capillary force balance is attained. Flow velocity profiles identify the passage from an inviscid flow to a developing Poiseuille flow. Gas density profiles ahead of the capillary front indicate a transient accumulation of air on the advancing meniscus. Furthermore, slower capillary filling rates computed for higher air pressures reveal a significant retarding effect of the gas displaced by the advancing meniscus.

    2014

    M. Fasil, D. Plesner, J. H. Walther, N. Mijatovic, J. Holbøll, and B. B. Jensen, “Numerical and experimental investigation of heat flow in permanent magnet brushless DC hub motor,” SAE International Journal of Alternative Powertrains, vol. 4, no. 1, pp. 46-57, 2014. Publisher's VersionAbstract
    This paper investigates the heat dissipation in the hub motor of an electric two-wheeler using lumped parameter (LP), finite element (FE) and computational fluid dynamic (CFD) models. The motor uses external rotor permanent magnet brushless DC topology and nearly all of its losses are generated in the stator. The hub motor construction restricts the available conductive paths for heat dissipation from the stator to the ambient only through the shaft. In contrast to an internal rotor structure, where the stator winding losses are diffused via conduction, here convection plays a major role in loss dissipation. Therefore, a LP thermal model with improved convection modelling has been proposed to calculate the temperature of the components inside the hub motor. The developed model is validated with the FE thermal model and the test data. In addition, CFD tools has been used to accurately model the internal and the external flow as well as the convective heat transfer of the hub motor. Finally, an optimization study of the hub motor has been carried out using the CFD model to improve heat transfer from the stator.
    H. A. Zambrano, J. H. Walther, and R. L. and Jaffe, “Molecular dynamics simulations of water on a hydrophilic silica surface at high air pressures,” Journal of Molecular Liquids, vol. 198, pp. 107–113, 2014. Publisher's VersionAbstract
    We present a force field for Molecular Dynamics (MD) simulations of water and air in contact with an amorphous silica surface. We calibrate the interactions of each species present in the system using dedicated criteria such as the contact angle of a water droplet on a silica surface, and the solubility of air in water at different pressures. Using the calibrated force field, we conduct MD simulations to study the interface between a hydrophilic silica substrate and water surrounded by air at different pressures. We find that the static water contact angle is independent of the air pressure imposed on the system. Our simulations reveal the presence of a nanometer thick layer of gas at the water–silica interface. We believe that this gas layer could promote nucleation and stabilization of surface nanobubbles at amorphous silica surfaces.
    P. E. Hadjidoukas, P. Angelikopoulos, C. Voglis, D. G. Papageorgiou, and I. E. Lagaris, “NDL-v2.0: a new version of the numerical differentiation library for parallel architectures,” Computer Physics Communications, vol. 185, no. 7, pp. 2217–2219, 2014. Publisher's VersionAbstract
    We present a new version of the numerical differentiation library (NDL) used for the numerical estimation of first and second order partial derivatives of a function by finite differencing. In this version we have restructured the serial implementation of the code so as to achieve optimal task-based parallelization. The pure shared-memory parallelization of the library has been based on the lightweight OpenMP tasking model allowing for the full extraction of the available parallelism and efficient scheduling of multiple concurrent library calls. On multicore clusters, parallelism is exploited by means of TORC, an MPI-based multi-threaded tasking library. The new MPI implementation of NDL provides optimal performance in terms of function calls and, furthermore, supports asynchronous execution of multiple library calls within legacy MPI programs. In addition, a Python interface has been implemented for all cases, exporting the functionality of our library to sequential Python codes.
    E. Sigurdsson, K. M. Ingvorsen, M. V. Jensen, S. Mayer, S. Matlok, and J. H. Walther, “Numerical analysis of the scavenge flow and convective heat transfer in large two-stroke marine diesel engines,” Applied Energy, vol. 123, pp. 37–46, 2014.Abstract
    A novel computational fluid dynamics (CFD) model is presented for the study of the scavenging process and convective heat transfer in a large two-stroke low-speed uniflow-scavenged marine diesel engine. The engine is modeled using a fully resolved 12° sector, corresponding to one scavenge port, with cyclic boundaries in the tangential direction. The CFD model is strongly coupled to experiments and effectively provides a high order “interpolation” of the engine processes through the solution of the Reynolds-Averaged Navier–Stokes (RANS) equations subject to boundary conditions obtained through experiments. The imposed experimental data includes time histories of the pressure difference across the engine and the heat release during combustion. The model is validated by a numerical sensitivity analysis and through a comparison of model predictions and experimental data, which shows a good agreement. The results show an effective scavenging and a low convective heat loss in agreement with experimental data for large marine diesel engines.
    K. M. Ingvorsen, K. E. Meyer, J. H. Walther, and S. Mayer, “Turbulent swirling flow in a dynamic model of a uniflow-scavenged two-stroke engine,” Experiments in Fluids, vol. 55, no. 6, pp. 1748, 2014. Publisher's VersionAbstract
    It is desirable to use computational fluid dynamics for optimization of the in-cylinder processes in low-speed two-stroke uniflow-scavenged marine diesel engines. However, the complex nature of the turbulent swirling in-cylinder flow necessitates experimental data for validation of the used turbulence models. In the present work, the flow in a dynamic scale model of a uniflow-scavenged cylinder is investigated experimentally. The model has a transparent cylinder and a moving piston driven by a linear motor. The flow is investigated using phase-locked stereoscopic particle image velocimetry (PIV) and time-resolved laser Doppler anemometry (LDA). Radial profiles of the phase-locked mean and rms velocities are computed from the velocity fields recorded with PIV, and the accuracy of the obtained profiles is demonstrated by comparison with reference LDA measurements. Measurements are carried out at five axial positions for 15 different times during the engine cycle and show the temporal and spatial development of the swirling in-cylinder flow. The tangential velocity profiles in the bottom of the cylinder near the end of the scavenge process are characterized by a concentrated swirl resulting in wake-like axial velocity profiles and the occurrence of a vortex breakdown. After scavenge port closing, the axial velocity profiles indicate that large transient swirl-induced structures exist in the cylinder. Comparison with profiles obtained under steady-flow conditions shows that the scavenge flow cannot be assumed to be quasi-steady. The temporal development of the swirl strength is investigated by computing the angular momentum. The swirl strength shows an exponential decay from scavenge port closing to scavenge port opening corresponding to a reduction of 34 %, which is in good agreement with theoretical predictions.
    P. E. Hadjidoukas, C. Voglis, V. V. Dimakopoulos, I. E. Lagaris, and D. G. Papageorgiou, “Supporting adaptive and irregular parallelism for non-linear numerical optimization,” Applied Mathematics and Computation, vol. 231, pp. 544–559, 2014. Publisher's VersionAbstract
    A global optimization framework for SMPs and multicore clusters is presented.It exploits hierarchal and dynamic task parallelism of the Multistart method.Gradient/Hessian calculations and Newton's optimization method are parallelized.Several task distribution schemes are studied and evaluated.Our framework is applied successfully to the protein conformation problem. This paper presents an infrastructure for high performance numerical optimization on clusters of multicore systems. Building on a runtime system which implements a programming and execution environment for irregular and adaptive task-based parallelism, we extract and exploit the parallelism of a Multistart optimization strategy at multiple levels, which include second order derivative calculations for Newton-based local optimization. The runtime system can support a dynamically changing hierarchical execution graph, without any assumptions on the levels of parallelization. This enables the optimization practitioners to implement, transparently, even more complicated schemes. We discuss parallelization details and task distribution schemes for managing nested and dynamic parallelism. In addition, we apply our framework to a real-world application case that concerns the protein conformation problem. Finally, we report performance results for all the components of our system on a multicore cluster.
    A. Obeidat, et al., “Large eddy simulations of the influence of piston position on the swirling flow in a model two-stroke diesel engine,” International Journal of Numerical Methods for Heat & Fluid Flow, vol. 24, no. 2, pp. 325–341, 2014. Publisher's VersionAbstract
    The purpose of this paper is to study the effect of piston position on the in-cylinder swirling flow in a simplified model of a large two-stroke marine diesel engine.
    C. L. Felter, J. H. Walther, and C. Henriksen, “Moving least squares simulation of free surface flows,” Computers & Fluids, vol. 91, pp. 47–56, 2014. Publisher's VersionAbstract
    In this paper a Moving Least Squares method (MLS) for the simulation of 2D free surface flows is presented. The emphasis is on the governing equations, the boundary conditions, and the numerical implementation. The compressible viscous isothermal Navier-Stokes equations are taken as the starting point. Then a boundary condition for pressure (or density) is developed. This condition is applicable at interfaces between different media such as fluid-solid or fluid-void. The effect of surface tension is included. The equations are discretized by a moving least squares method for the spatial derivatives and a Runge-Kutta method for the time derivatives. The computational frame is Lagrangian, which means that the computational nodes are convected with the flow. The method proposed here is benchmarked using the standard lid driven cavity problem, a rotating free surface problem, and the simulation of drop oscillations. A new exact solution to the unsteady incompressible Navier-Stokes equations is introduced for the rotating free surface problem.

    2013

    C. Voglis, P. E. Hadjidoukas, D. G. Papageorgiou, and I. E. Lagaris, “A parallel hybrid optimization algorithm for fitting interatomic potentials,” Applied Soft Computing, vol. 13, no. 12, pp. 4481–4492, 2013. Publisher's VersionAbstract
    In this work we present the parallel implementation of a hybrid global optimization algorithm assembled specifically to tackle a class of time consuming interatomic potential fitting problems. The resulting objec- tive function is characterized by large and varying execution times, discontinuity and lack of derivative information. The presented global optimization algorithm corresponds to an irregular, two-level execu- tion task graph where tasks are spawned dynamically. We use the OpenMP tasking model to express the inherent parallelism of the algorithm on shared-memory systems and a runtime library which imple- ments the execution environment for adaptive task-based parallelism on multicore clusters. We describe in detail the hybrid global optimization algorithm and various parallel implementation issues. The pro- posed methodology is then applied to a specific instance of the interatomic potential fitting problem for the metal titanium. Extensive numerical experiments indicate that the proposed algorithm achieves the best parallel performance. In addition, its serial implementation performs well and therefore can also be used as a general purpose optimization algorithm.
    M. M. Hejlesen, J. T. Rasmussen, P. Chatelain, and J. H. Walther, “A high order solver for the unbounded poisson equation,” Journal of Computational Physics, vol. 252, pp. 458–467, 2013. Publisher's VersionAbstract
    A high order converging Poisson solver is presented, based on the Green{‘}s function solution to Poisson{‘}s equation subject to free-space boundary conditions. The high order convergence is achieved by formulating regularised integration kernels, analogous to a smoothing of the solution field. The method is extended to directly solve the derivatives of the solution to Poisson{‘}s equation. In this way differential operators such as the divergence or curl of the solution field can be solved to the same high order convergence without additional computational effort. The method, is applied and validated, however not restricted, to the equations of fluid mechanics, and can be used in many applications to solve Poisson{‘}s equation on a rectangular unbounded domain.
    M. V. Jensen and J. H. Walther, “Numerical analysis of jet impingement heat transfer at high jet Reynolds number and large temperature difference,” Heat Transfer Engineering, vol. 34, no. 10, pp. 801–809, 2013. Publisher's VersionAbstract
    Jet impingement heat transfer from a round gas jet to a flat wall was investigated numerically for a ratio of 2 between the jet inlet to wall distance and the jet inlet diameter. The influence of turbulence intensity at the jet inlet and choice of turbulence model on the wall heat transfer was investigated at a jet Reynolds number of 1.66 {\texttimes} 105 and a temperature difference between jet inlet and wall of 1600 K. The focus was on the convective heat transfer contribution as thermal radiation was not included in the investigation. A considerable influence of the turbulence intensity at the jet inlet was observed in the stagnation region, where the wall heat flux increased by a factor of almost 3 when increasing the turbulence intensity from 1.5% to 10%. The choice of turbulence model also influenced the heat transfer predictions significantly, especially in the stagnation region, where differences of up to about 100% were observed. Furthermore, the variation in stagnation point heat transfer was examined for jet Reynolds numbers in the range from 1.10 {\texttimes} 105 to 6.64 {\texttimes} 105. Based on the investigations, a correlation is suggested between the stagnation point Nusselt number, the jet Reynolds number, and the turbulence intensity at the jet inlet for impinging jet flows at high jet Reynolds numbers.

    2012

    S. Haider, et al., “PIV study of the effect of piston position on the in-cylinder swirling flow during the scavenging process in large two-stroke marine diesel engines,” Journal of Marine Science and Technology, vol. 18, no. 1, pp. 133–143, 2012. Publisher's VersionAbstract
    A simplified model of a low speed large two- stroke marine diesel engine cylinder is developed. The effect of piston position on the in-cylinder swirling flow during the scavenging process is studied using the stereo- scopic particle image velocimetry technique. The mea- surements are conducted at different cross-sectional planes along the cylinder length and at piston positions covering the air intake port by 0, 25, 50 and 75 %. When the intake port is fully open, the tangential velocity profile is similar to a Burgers vortex, whereas the axial velocity has a wake- like profile. Due to internal wall friction, the swirl decays downstream, and the size of the vortex core increases. For increasing port closures, the tangential velocity profile changes from a Burgers vortex to a forced vortex, and the axial velocity changes correspondingly from a wake-like profile to a jet-like profile. For piston position with 75 % intake port closure, the jet-like axial velocity profile at a cross-sectional plane close to the intake port changes back to a wake-like profile at the adjacent downstream cross-sectional plane. This is characteristic of a vortex breakdown. The non-dimensional velocity profiles show no significant variation with the variation in Reynolds number.

    2011

    H. Riisgård, et al., “The exhalant jet of mussels mytilus edulis,” Marine Ecology Progress Series, vol. 437, pp. 147–164, 2011. Publisher's VersionAbstract
    Literature values of the exhalant jet velocity of mussels vary considerably, and the detailed fluid mechanics of the mussel-near flow generated by the exhalant jet has hitherto been uncertain although this flow in conjunction with currents and/or other mussels may strongly influence their grazing impact. Computational modelling of this phenomenon depends on knowledge of the velocity distribution near the exhalant siphon aperture of mussels to provide appropriate boundary conditions for numerical flow models, and to be useful such information should be available for a range of mussel shell lengths. Here, we present results of a detailed study of fully open mussels (Mytilus edulis) in terms of filtration rate, exhalant siphon-aperture area and jet velocity, gill area, dry body weight, all as function of shell length over the range L = 16.0 +/- 0.4 to 82.6 +/- 2.9 mm. Scaling laws for these parameters in terms of size by shell length are presented. The exhalant jet velocity was determined by three methods: 1) measured clearance rate divided by exhalant aperture area, 2) manual particle tracking velocimetry (PTV) using video-microscope recordings, and 3) particle image velocimetry (PIV). The latter provides detailed two-component velocity distributions near the exhalant siphon in 5 planes parallel to the axis of the jet and the major axis of the oval aperture, hence estimates of momentum and kinetic energy flows in addition to mean velocity. Here, data obtained on particles inside the exhalant jet of filtered water was ensured by the use of TiO2 seeding particles which were de-agglomerated by ultrasound to size-range 0.7 to 2 {\mathrm{μ}}m prior to addition to avoid retention by the gill-filter of the mussels. Notably it was found that the exhalant jet velocity is essentially constant, about 8 cm s-1, and independent of shell length. Based on geometric similarity and scaling of pump-system characteristics of the mussel it was found that these characteristics coincide approximately for all sizes when expressed as pressure head versus volume flow divided by shell length squared.
    J. T. Rasmussen, G. Cottet, and J. H. Walther, “A multiresolution remeshed vortex-in-cell algorithm using patches,” Journal of Computational Physics, vol. 230, no. 17, pp. 6742–6755, 2011. Publisher's VersionAbstract
    We present a novel multiresolution Vortex-In-Cell algorithm using patches of varying resolution. The Poisson equation relating the fluid vorticity and velocity is solved using Fast Fourier Transforms subject to free space boundary conditions. Solid boundaries are implemented using the semi-implicit formulation of Brinkman penalization and we show that the penalization can be carried out as a simple interpolation. We validate the implementation against the analytic solution to the Perlman test case and by free-space simulations of the onset flow around fixed and rotating circular cylinders and bluff body flows around bridge sections.

    2010

    J. T. Rasmussen, M. M. Hejlesen, A. Larsen, and J. H. Walther, “Discrete vortex method simulations of the aerodynamic admittance in bridge aerodynamics,” Journal of Wind Engineering and Industrial Aerodynamics, vol. 98, no. 12, pp. 754–766, 2010. Publisher's VersionAbstract
    We present a novel method for the simulation of the aerodynamic admittance in bluff body aerodynamics. The method introduces a model for describing oncoming turbulence in two-dimensional discrete vortex method simulations by seeding the upstream flow with vortex particle.s The turbulence is generated prior to the simulations and is based on analytic spectral densities of the atmospheric turbulence and a coherence function defining the spatial correlation of the flow. The method is validated by simulating the turbulent flow past a flat plate and past the Great Belt East bridge. The results are generally found in good agreement with the potential flow solution due to Liepmann.

    2009

    H. A. Zambrano, J. H. Walther, and R. L. Jaffe, “Thermally driven molecular linear motors: a molecular dynamics study,” The Journal of Chemical Physics, vol. 131, no. 24, pp. 241104, 2009. Publisher's VersionAbstract
    We conduct molecular dynamics simulations of a molecular linear motor consisting of coaxial carbon nanotubes with a long outer carbon nanotube confining and guiding the motion of an inner short, capsulelike nanotube. The simulations indicate that the motion of the capsule can be controlled by thermophoretic forces induced by thermal gradients. The simulations find large terminal velocities of 100{–}400 nm/ns for imposed thermal gradients in the range of 1{–}3 K/nm. Moreover, the results indicate that the thermophoretic force is velocity dependent and its magnitude decreases for increasing velocity.
    J. H. Walther and I. F. Sbalzarini, “Large-scale parallel discrete element simulations of granular flow,” Engineering Computations, vol. 26, no. 6, pp. 688–697, 2009. Publisher's VersionAbstract
    The purpose of this paper is to present large-scale parallel direct numerical simulations of granular flow, using a novel, portable software program for discrete element method (DEM) simulations. Since particle methods provide a unifying framework for both discrete and continuous systems, the program is based on the parallel particle mesh (PPM) library, which has already been demonstrated to provide transparent parallelization and state-of-the-art parallel efficiency using particle methods for continuous systems. By adapting PPM to discrete systems, results are reported from three-dimensional simulations of a sand avalanche down an inclined plane. The paper demonstrates the parallel performance and scalability of the new simulation program using up to 122 million particles on 192 processors, employing adaptive domain decomposition and load balancing techniques.

    2007

    G. Morgenthal and J. H. Walther, “An immersed interface method for the vortex-in-cell algorithm,” Computers & Structures, vol. 85, no. 11-14, pp. 712–726, 2007. Publisher's VersionAbstract
    The paper presents a two-dimensional immersed interface technique for the Vortex-In-Cell (VIC) method for simulation of flows past bodies of complex geometry. The particle-mesh VIC algorithm is augmented by a local particle-particle correction term in a Particle-Particle Particle-Mesh ((PM)-M-3) context to resolve sub-grid scales incurred by the presence of the immersed interface. The particle-particle correction furthermore allows to disjoin mesh and particle resolution by explicitly resolving sub-grid scales on the particles. This (PM)-M-3 algorithm uses an influence matrix technique to annihilate the anisotropic sub-grid scales and adds an exact particle-particle correction term. Free-space boundary conditions are satisfied through the use of modified Green’s functions in the solution of the Poisson equation for the streamfunction. The concept is extended such as to provide exact velocity predictions on the mesh with free-space boundary conditions. The random walk technique is employed for the diffusion in order to relax the need for a remeshing of the computational elements close to solid boundaries. A novel partial remeshing technique is introduced which only performs remeshing of the vortex elements which are located sufficiently distant from the immersed interfaces, thus maintaining a sufficient spatial representation of the vorticity field. Convergence of the present (PM)-M-3 algorithm is demonstrated for a circular patch of vorticity. The immersed interface technique is applied to the flow past a circular cylinder at a Reynolds number of 3000 and the convergence of the method is demonstrated by a systematic refinement of the spatial parameters. Finally, the flow past a cactus-like geometry is considered to demonstrate the efficient handling of complex bluff body geometries. The simulations offer an insight into physically interesting flow behavior involving a temporarily negative total drag force on the section. (C) 2007 Elsevier Ltd. All rights reserved.

    2006

    N. Hansen, “An analysis of mutative Σ-self-adaptation on linear fitness functions,” Evolutionary Computation, vol. 14, no. 3, pp. 255–275, 2006. Publisher's VersionAbstract
    This paper investigates sigma-self-adaptation for real valued evolutionary algorithms on linear fitness functions. We identify the step-size logarithm log sigma as a key quantity to understand strategy behavior. Knowing the bias of mutation, recombination, and selection on log sigma is sufficient to explain sigma-dynamics and strategy behavior in many cases, even from previously reported results on non-linear and/or noisy fitness functions. On a linear fitness function, if intermediate multi-recombination is applied on the object parameters, the i-th best and the i-th worst individual have the same sigma-distribution. Consequently, the correlation between fitness and step-size sigma is zero. Assuming additionally that sigma-changes due to mutation and recombination are unbiased, then sigma-self-adaptation enlarges sigma if and only if mu < lambda/2, given (mu, lambda)-truncation selection. Experiments show the relevance of the given assumptions.
    S. Zimmermann, P. Bauer, R. Held, W. Kinzelbach, and J. H. Walther, “Salt transport on islands in the okavango delta: numerical investigations,” Publisher, vol. 29, no. 1, pp. 11–29, 2006. Publisher's VersionAbstract
    This study uses a numerical model to investigate the groundwater flow and salt transport mechanisms below islands in the Okavango Delta. Continuous evapotranspiration on the islands results in accumulation of solutes and the formation of a saline boundary layer, which may eventually become unstable. A novel Lagrangian method is employed in this study and compared to other numerical methods. The numerical results support the geophysical observations of density fingering on Thata Island. However, the process is slow and it takes some hundreds of years until density fingering is triggered. The results are sensitive to changes of the hydraulic gradient and the evapotranspiration rate. Small changes may lead to different plume developments. Results further demonstrate that density effects may be entirely overridden by lateral flow on islands embedded in a sufficiently high regional hydraulic gradient. (c) 2005 Elsevier Ltd. All rights reserved.

    2005

    C. Luedeke, S. B. Frei, I. Sbalzarini, H. Schwarz, A. Spang, and Y. Barral, “Septin-dependent compartmentalization of the endoplasmic reticulum during yeast polarized growth,” The Journal of Cell Biology, vol. 169, no. 6, pp. 897–908, 2005. Publisher's VersionAbstract
    Polarized cells frequently use diffusion barriers to separate plasma membrane domains. It is unknown whether diffusion barriers also compartmentalize intracellular organelles. We used photobleaching techniques to characterize protein diffusion in the yeast endoplasmic reticulum (ER). Although a soluble protein diffused rapidly throughout the ER lumen, diffusion of ER membrane proteins was restricted at the bud neck. Ultrastructural studies and fluorescence microscopy revealed the presence of a ring of smooth ER at the bud neck. This ER domain and the restriction of diffusion for ER membrane proteins through the bud neck depended on septin function. The membrane-associated protein Bud6 localized to the bud neck in a septin-dependent manner and was required to restrict the diffusion of ER membrane proteins. Our results indicate that Bud6 acts downstream of septins to assemble a fence in the ER membrane at the bud neck. Thus, in polarized yeast cells, diffusion barriers compartmentalize the ER and the plasma membrane along parallel lines.

    2004

    F. Lisacek, et al., “Shaping biological knowledge: applications in proteomics,” Comparative and Functional Genomics, vol. 5, no. 2, pp. 190–195, 2014. Publisher's VersionAbstract
    The central dogma of molecular biology has provided a meaningful principle for data integration in the field of genomics. In this context, integration reflects the known transitions from a chromosome to a protein sequence: transcription, intron splicing, exon assembly and translation. There is no such clear principle for integrating proteomics data, since the laws governing protein folding and interactivity are not quite understood. In our effort to bring together independent pieces of information relative to proteins in a biologically meaningful way, we assess the bias of bioinformatics resources and consequent approximations in the framework of small-scale studies. We analyse proteomics data while following both a data-driven (focus on proteins smaller than 10 kDa) and a hypothesis-driven (focus on whole bacterial proteomes) approach. These applications are potentially the source of specialized complements to classical biological ontologies. Copyright (C) 2004 John Wiley Sons, Ltd.
    P. Gonnet, K. E. Rudd, and F. Lisacek, “Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins ofEscherichia coli k-12,” Proteomics, vol. 4, no. 6, pp. 1597–1613, 2004. Publisher's VersionAbstract
    A curated set of 81 proven and 44 predicted lipoproteins of Escherichia coli K-12 was defined with the combined use of a literature survey, a variety of predictive tools and human expertise. The well-documented Gram-negative proteome of E. coli K-12 was chosen to assess how the different approaches complement each other and to ensure a stable definition of a consistent set of lipoproteins. The results of detailed analysis of such proteins at the level of a single proteome are presented, corroborated and rationalized.

    2003

    O. A. Cirpka and S. Attinger, “Effective dispersion in heterogeneous media under random transient flow conditions,” Water Resources Research, vol. 39, no. 9, 2003. Publisher's VersionAbstract
    Under steady state flow conditions, solute dispersion in heterogeneous porous media is much smaller in the transverse than in the longitudinal direction. This holds particularly for effective dispersion of a plume originating from a point-like injection. The effective dispersion coefficient describes the actual dispersive mixing of solutes in the aquifer. The lack of dispersive transverse mixing may limit considerably natural attenuation of certain contaminants. Temporal fluctuations of the flow direction enhance horizontal transverse dispersion. This has been shown previously for uniform flow and for macrodispersion in stationary media. We present a linear stochastic theory for effective dispersion under quasi-steady state flow conditions with random temporal fluctuations of the mean flow direction. As for macrodispersion, effective transverse dispersion proves to be dominated by transient flow effects. We compare semianalytical results derived from linear theory to those from particle-tracking random-walk simulations for a three-dimensional test case. The parameters of the test case are similar to those obtained at the Borden site, where the mean transverse flow component fluctuated approximately by ±10°. Linear theory and particle simulations agree well.
    M. Bergdorf, C. Peter, and P. H. Hünenberger, “Influence of cut-off truncation and artificial periodicity of electrostatic interactions in molecular simulations of solvated ions: a continuum electrostatics study,” The Journal of Chemical Physics, vol. 119, no. 17, pp. 9129–9144, 2003. Publisher's VersionAbstract
    A new algorithm relying on finite integration is presented that solves the equations of continuum electrostatics for truncated (and possibly reaction-field corrected) solute-solvent and solvent-solvent interactions under either nonperiodic or periodic boundary conditions. After testing and validation by comparison with existing methods, the algorithm is applied to investigate the effect of cut-off truncation and artificial periodicity in explicit-solvent simulations of ionic solvation and ion-ion interactions. Both cut-off truncation and artificial periodicity significantly alter the polarization around a spherical ion and thus, its solvation free energy. The nature and magnitude of the two perturbations are analyzed in details, and correction terms are proposed for both effects. Cut-off truncation is also shown to induce strong alterations in the potential of mean force for ion-ion interaction. These observations help to rationalize artifacts previously observed in explicit-solvent simulations, namely spurious features in the radial distribution functions close to the cut-off distance and alterations in the relative stabilities of contact, solvent-separated and free ion pairs. (C) 2003 American Institute of Physics.
    J. H. Walther, “An influence matrix particle–particle particle-mesh algorithm with exact particle–particle correction,” The Journal of Chemical Physics, vol. 184, no. 2, pp. 670–678, 2003. Publisher's VersionAbstract
    The classical N -body problem consisting of the interaction of N computational particles, is the key computational issue in a number of diverse fields of science including chemistry, fluid dynamics, and astrophysics. For particles interacting through long range potentials the direct evaluation of their mutual interaction nominally scales as OðN Þ. In order to reduce this computational cost a simple truncation of the interaction potential appears to be a viable approach for homogeneous (neutral) systems [1], reducing the operational count to OðNÞ. While this approximation may suffice for the modelling of the electrostatic interaction in molecular dynamics (MD) simulations, the assumption is insufficient for problems in fluid dynamics and astrophysics. In these cases, and for MD simulations requiring higher accuracy than warranted by a simple truncation, fast methods have been devised such as the Barnes–Hut [3] and the fast multipole method [7], as well as hybrid mesh based algorithms including the particle-mesh (PM) and the particle–particle particle-mesh (PPPM) algorithm originally proposed by Hockney and Eastwood [9]. While fast multipole methods offer an operational cost of OðNÞ and an exact enforcement of the freespace boundary condition, hybrid particle-mesh algorithms with an operational cost of OðN logNÞ or OðNÞ are often found to be computationally superior for problems in simple geometries and for periodic systems. The particle-mesh algorithm is based on the observation that the three-dimensional, free-space Green s function to the Laplace operator (r2) is 1=4pr, and they attain their efficiency by employing fast Fourier transforms or fast iterative solvers for the solution of the field equation on a mesh. The density field is constructed on the mesh from the strength of the particles using a smooth projection, which also serves to interpolate the computed force field back onto the particles. For particle systems involving non-smooth density fields the exact force field will contain sub-grid scales not resolved by the PM algorithm, and an explicit particle–particle (PP) correction term (f) is required to Journal of Computational Physics 184 (2003) 670–678
    F. A. Gers, N. N. Schraudolph, and J. Schmidhuber, “Learning precise timing with lstm recurrent networks,” Journal of Machine Learning Research, vol. 3, pp. 115–143, 2003. Publisher's VersionAbstract
    The temporal distance between events conveys information essential for numerous sequential tasks such as motor control and rhythm detection. While Hidden Markov Models tend to ignore this information, recurrent neural networks (RNNs) can in principle learn to make use of it. We focus on Long Short-Term Memory (LSTM) because it has been shown to outperform other RNNs on tasks involving long time lags. We find that LSTM augmented by “peephole connections" from its internal cells to its multiplicative gates can learn the fine distinction between sequences of spikes spaced either 50 or 49 time steps apart without the help of any short training exemplars. Without external resets or teacher forcing, our LSTM variant also learns to generate stable streams of precisely timed spikes and other highly nonlinear periodic patterns. This makes LSTM a promising approach for tasks that require the accurate measurement or generation of time intervals.

    2002

    R. Herbrich and T. Graepel, “A PAC-Bayesian margin bound for linear classifiers,” IEEE Transactions on Information Theory, vol. 48, no. 12, pp. 3140–3150, 2002. Publisher's VersionAbstract
    We present a bound on the generalization error of linear classifiers in terms of a refined margin quantity on the training sample. The result is obtained in a probably approximately correct (PAC)-Bayesian framework and is based on geometrical arguments in the space of linear classifiers. The new bound constitutes an exponential improvement of the so far tightest margin bound, which was developed in the luckiness framework, and scales logarithmically in the inverse margin. Even in the case of less training examples than input dimensions sufficiently large margins lead to nontrivial bound values and-for maximum margins-to a vanishing complexity term. In contrast to previous results, however, the new bound does depend on the dimensionality of feature space. The analysis shows that the classical margin is too coarse a measure for the essential quantity that controls the generalization error: the fraction of hypothesis space consistent with the training sample. The practical relevance of the result lies in the fact that the well-known support vector machine is optimal with respect to the new bound only if the feature vectors in the training sample are all of the same length. As a consequence, we recommend to use support vector machines (SVMs) on normalized feature vectors only. Numerical simulations support this recommendation and demonstrate that the new error bound can be used for the purpose of model selection.
    M. Dentz, H. Kinzelbach, S. Attinger, and W. Kinzelbach, “Temporal behavior of a solute cloud in a heterogeneous porous medium 3. numerical simulations,” Water Resources Research, vol. 38, no. 7, pp. 23–1–23–13, 2002. Publisher's VersionAbstract
    The article presents systematic numerical simulations of the temporal behavior of a passive solute in a saturated three-dimensional heterogeneous medium. The groundwater flow is derived from the linearized solution of the Darcy equation with Gauss-distributed log hydraulic conductivity. The transport of a passive solute is studied by a random-walk method, which allows for a systematic study of the temporal behavior of the effective and ensemble dispersion coefficients. The numerical results are compared to the second-order perturbation theory expressions given in two companion papers [Dentz et al., 2000a, 2000b] and to nonperturbative results which follow from Corrsin{‘}s conjecture. The low-order perturbation theory is intrinsically based on the assumption of small heterogeneity, while Corrsin{‘}s conjecture does not take into account certain contributions due to higher-order terms of the perturbation series. The simulations yield, for the first time, systematic quantitative information on the validity and the limitations of these analytic approximations. For increasing heterogeneities, considerable deviations from the theoretically predicted transport behavior are observed.
    F. Stauffer, S. Attinger, S. Zimmermann, and W. Kinzelbach, “Uncertainty estimation of well catchments in heterogeneous aquifers,” Water Resources Research, vol. 38, no. 11, pp. 20–1–20–8, 2002. Publisher's VersionAbstract
    The uncertainty in the boundary of two-dimensional, steady state well catchments due to the uncertainty of the spatially variable hydraulic conductivity field is investigated. The well discharge rate and the areal recharge rate are assumed constant. The catchment boundary is traced by backward particle tracking in the velocity field. The uncertainty bandwidth of the catchment boundary is approximated in first order by formulating the time-dependent longitudinal and transversal second moments of the particle displacements along and normal to the mean particle trajectory. Applications of the approach are presented for a set of simple configurations. The results are compared with the results from unconditional numerical Monte Carlo simulations. The comparison allows an assessment of the accuracy, the applicability, and the limits of the method. The approximation corresponds quite well with the Monte Carlo simulations provided that the distance to the domain boundary is sufficiently large.
    I. Lunati, S. Attinger, and W. Kinzelbach, “Macrodispersivity for transport in arbitrary nonuniform flow fields: asymptotic and preasymptotic results,” Water Resources Research, vol. 38, no. 10, pp. 5–1–5–11, 2002. Publisher's VersionAbstract
    We use homogenization theory to investigate the asymptotic macrodispersion in arbitrary nonuniform velocity fields, which show small-scale fluctuations. In the first part of the paper, a multiple-scale expansion analysis is performed to study transport phenomena in the asymptotic limit epsilon << 1, where epsilon represents the ratio between typical lengths of the small and large scale. In this limit the effects of small-scale velocity fluctuations on the transport behavior are described by a macrodispersive term, and our analysis provides an additional local equation that allows calculating the macrodispersive tensor. For Darcian flow fields we show that the macrodispersivity is a fourth-rank tensor. If dispersion/diffusion can be neglected, it depends only on the direction of the mean flow with respect to the principal axes of anisotropy of the medium. Hence the macrodispersivity represents a medium property. In the second part of the paper, we heuristically extend the theory to finite epsilon effects. Our results differ from those obtained in the common probabilistic approach employing ensemble averages. This demonstrates that standard ensemble averaging does not consistently account for finite scale effects: it tends to overestimate the dispersion coefficient in the single realization.
    S. Attinger, J. Eberhard, and N. Neuss, “Filtering procedures for flow in heterogeneous porous media: numerical results,” Computing and Visualization in Science, vol. 5, no. 2, pp. 67–72, 2002. Publisher's VersionAbstract
    This paper focuses on heterogeneous soil permeabilities and on the impact their resolution has on the solution of the piezometric head equation. The method of coarse graining is proposed in order to filter the piezometric head equation on arbitrary support scales: Large scale fluctuations of the permeabilities are resolved, whereas small scale fluctuations are smoothed by a spatial filtering procedure. The filtering procedure is performed in Fourier space with the aid of a low-frequency cut-off function. In the filtered equations, the impact of the small scale variability is modeled by scale dependent effective permeabilities which are determined by additional differential equations. The additional differential equations are equivalent to the piezometric head equation on cells which are solved numerically by using the software toolbox UG. The numerical results are compared with the theoretical results derived in Attinger 2001
    J. H. Walther and G. Morgenthal, “An immersed interface method for the vortex-in-cell algorithm,” Journal of Turbulence, vol. 3, pp. N39, 2002. Publisher's VersionAbstract
    The paper presents a two-dimensional immersed interface technique for the vortex-in-cell (VIC) method for the simulation of flows past complex geometries. The particle mesh VIC algorithm is augmented by a local particle-particle (PP) correction term in a particle-particle particle-mesh (PPPM) context to resolve sub-grid scales incurred by the presence of the immersed interface. The PP correction furthermore allows mesh and particle resolution to be disjoined by explicitly resolving sub-grid scales on the particles. This PPPM algorithm uses an influence matrix technique to annihilate the anisotropic subgrid scales and an exact PP correction term. Free-space boundary conditions are satisfied through the use of modified Green’s functions in the solution of the Poisson equation for the stream function. The random walk technique is employed for the diffusion in order to relax the need for a remeshing of the computational elements close to solid boundaries. The immersed interface technique is applied to the flow past a circular cylinder at a Reynolds number of 3000 and the convergence of the method is demonstrated by a systematic refinement of the spatial and temporal parameters. Finally, the flow past a cactus-like geometry is considered, demonstrating the efficient handling of complex bluff body flows.
    P. Gonnet and F. Lisacek, “Probabilistic alignment of motifs with sequences,” Bioinformatics, vol. 18, no. 8, pp. 1091–1101, 2002. Publisher's VersionAbstract
    Motivation: Motif detection is an important component of the classification and annotation of protein sequences. A method for aligning motifs with an amino acid sequence is introduced. The motifs can be described by the secondary (i.e. functional, biophysical, etc…) characteristics of a signal or pattern to be detected. The results produced are based on the statistical relevance of the alignment. The method was targeted to avoid the problems (i.e. over-fitting, biological interpretation and mathematical soundness) encountered in other methods currently available.
    N. N. Schraudolph, “Fast curvature matrix-vector products for second-order gradient descent,Neural Computation, vol. 14, no. 7, pp. 1723–1738, 2002. Publisher's VersionAbstract
    We propose a generic method for iteratively approximating various second-order gradient steps—-Newton, Gauss-Newton, Levenberg-Marquardt, and natural gradient—-in linear time per iteration, using special curvature matrix-vector products that can be computed in O (n) . Two recent acceleration techniques for on-line learning, matrix momentum and stochastic meta-descent (SMD), implement this approach. Since both were originally derived by very different routes, this offers fresh insight into their operation, resulting in further improvements to SMD.
    P. Yi, D. Poulikakos, J. Walther, and G. Yadigaroglu, “Molecular dynamics simulation of vaporization of an ultra-thin liquid argon layer on a surface,” International Journal of Heat and Mass Transfer, vol. 45, no. 10, pp. 2087–2100, 2002. Publisher's VersionAbstract
    We performed molecular dynamics simulations of the vaporization phenomenon of an ultra-thin layer (2 nm) of liquid argon on a platinum surface. The simulation started from a molecular system of three phases (liquid argon, solid platinum and argon vapor) in equilibrium at 110 K. The platinum wall was then suddenly heated to a higher temperature (a moderately higher temperature of 150 K and a much higher temperature of 300 K were investigated). Features of our simulation model include a fast algorithm based on a tree data structure and a constant temperature solid wall model based on a 3-D Langevin equation. The entire vaporization process was successfully simulated. The results reveal trends that agree with our knowledge of vaporization of a similar macroscopic system. For example, for the high surface temperature the vaporization process is reminiscent of the Leidenfrost phenomenon and after the formation of a vapor region between the surface and the liquid mass, the latter deforms and tends to approximately acquire a spherical “droplet" shape, as one would have expected from macroscopic considerations. Contrary to this, a gradual evaporation process occurs at moderate wall temperatures. After complete evaporation and upon reduction of the wall temperature, condensation takes place leading to reconstruction of the initial liquid layer. (C) 2002 Elsevier Science Ltd. All rights reserved.
    S. Attinger, “Parameterizing macro-dispersivity: first pick a length scale,” Hydrological Processes, vol. 16, no. 8, pp. 1685–1687, 2002. Publisher's VersionAbstract
    Dispersion is the result, observable on large length scales, of events which are random on small length scales. When the length scale on which the randomness operates is not small, relative to the observations, then classical dispersion theory fails. The scale up problem refers to situations in which randomness occurs on all length scales, and for which classical dispersion theory necessarily fails. The purpose of this article is to present non-Fickian, theories of dispersion, which do not assume a scale separation between the randomness and the observed consequences, and which do not assume a single length scale.Porous media flow properties are heterogeneous on all length scales. The geological variation on length scales below the observational length scale can be regarded as unknown and unknowable, and thus as a random variable.We develop a systematic theory relating scaling behavior of the geological heterogeneity to the scaling behavior of the fluid dispersivity. Three qualitatively distinct regimes (Fickian, non-Fickian and nonrenormalizable) are found. The theory gives consistent answers within several distinct analytic approximations, and with numerical simulation of the equations of porous media flow.Comparison to field data is made. The use of Kriging to generate constrained ensembles for conditional simulation is discussed.

    2001

    T. Werder, K. Gerdes, D. Schötzau, and C. Schwab, “Hp-discontinuous galerkin time stepping for parabolic problems,Computer Methods in Applied Mechanics and Engineering, vol. 190, no. 49-50, pp. 6685–6708, 2001. Publisher's VersionAbstract
    The algorithmic pattern of the lip-discontinuous Galerkin finite element method (DGFEM) for the time semidiscretization of parabolic evolution equations is presented. In combination with a continuous hp-discretization in space we obtain a fully discrete hp-scheme for the numerical solution of parabolic problems. Numerical examples for the heat equation in a two-dimensional domain confirm the exponential convergence rates which are predicted by theoretical results, under realistic assumptions on the init.
    M. Klapper-Rybicka, N. N. Schraudolph, and J. Schmidhuber, “Unsupervised learning in LSTM recurrent neural networks,” ICANN '01: Proceedings of the International Conference on Artificial Neural Networks, pp. 684–691, 2001. Publisher's VersionAbstract
    While much work has been done on unsupervised learning in feedforward neural network architectures, its potential with (theoretically more powerful) recurrent networks and time-varying inputs has rarely been explored. Here we train Long Short-Term Memory (LSTM) recurrent networks to maximize two information-theoretic objectives for unsupervised learning: Binary Information Gain Optimization (BINGO) and Nonparametric Entropy Optimization (NEO). LSTM learns to discriminate different types of temporal sequences and group them according to a variety of features.
    N. Hansen and A. Ostermeier, “Completely derandomized self-adaptation in evolution strategies,” Evolutionary Computation, vol. 9, no. 2, pp. 159–195, 2001. Publisher's VersionAbstract
    This paper puts forward two useful methods for self-adaptation of the mutation distribution – the concepts of derandomization and cumulation. Principle shortcomings of the concept of mutative strategy parameter control and two levels of derandomization are reviewed. Basic demands on the self-adaptation of arbitrary (normal) mutation distributions are developed. Applying arbitrary, normal Mutation distributions is equivalent to applying a general, linear problem encoding. The underlying objective of mutative strategy parameter control is roughly to favor previously selected mutation steps in the future. If this objective is pursued rigorously, a completely derandomized self-adaptation scheme results, which adapts arbitrary normal mutation distributions. This scheme, called covariance matrix adaptation (CMA), meets the previously stated demands. It can still be considerably improved by cumulation – utilizing an evolution path rather than single search steps. Simulations on various test functions reveal local and global search properties of the evolution strategy with and without covariance matrix adaptation. Their performances are comparable only on perfectly scaled functions. On badly scaled, nonseparable functions usually a speed up factor of several orders of magnitude is observed. On moderately mis-scaled functions a speed up factor of three to ten can be expected.

    2000

    L. Glielmo, M. Milano, and S. Santini, “A machine learning approach to modeling and identification of automotive three-way catalytic converters,” IEEE/ASME Transactions on Mechatronics, vol. 5, no. 2, pp. 132–141, 2000. Publisher's VersionAbstract
    The working of three-way catalytic converters (TWC’s) is based on chemical reactions whose rates are nonlinear functions of temperature and reactant concentrations all along the device. Unfortunately, the choice of suitable expressions and the tuning of their parameters is particularly difficult in dynamic conditions. In this paper we introduce a hybrid modeling technique which allows us to preserve the most important features of an accurate distributed parameter TWC model, while it circumvents both the structural and the parameter uncertainties of “classical" reaction kinetics models, and saves computational time. In particular, we compute the rates within the TWC dynamic model by a neural network which, thus, becomes a static nonlinear component of a larger dynamic system. A purposely designed genetic algorithm, in conjunction with a fast ad hoc partial differential equation integration procedure, allows us to train the neural network, embedded in the whole model structure, using currently available measurement data and without computing gradient information.
    D. Bueche, N. Sukumar, and B. Moran, “Dispersive properties of the natural element method,” Computational Mechanics, vol. 25, no. 2-3, pp. 207–219, 2000. Publisher's VersionAbstract
    The Natural Element Method (NEM) is a meshfree numerical method for the solution of partial differential equations. In the natural element method, natural neighbor coordinates, which are based on the Voronoi tesselation of a set of nodes, are used to construct the interpolant. The performance of NEM in two-dimensional linear elastodynamics is investigated. A standard Galerkin formulation is used to obtain the weak form and a central-difference time integration scheme is chosen for time history analyses. Two different applications are considered: vibration of a cantilever beam and dispersion analysis of the wave equations. The NEM results are compared to finite element and analytical solutions. Excellent dispersive properties of NEM are observed and good agreement with analytical solutions is obtained.

    1999

    P. Marino, M. Milano, and F. Vasca, “Linear quadratic state feedback and robust neural network estimator for field-oriented-controlled induction motors,” IEEE Transactions on Industrial Electronics, vol. 46, no. 1, pp. 150–161, 1999. Publisher's VersionAbstract
    A field oriented control scheme for induction motor with a Linear Quadratic optimal regulator and a robust neural network estimator is proposed. The state feedback is designed by using the synchronous frame motor model. The number of the states is increased in order to take into account the presence of two integrators on the flux and torque errors. The resulting model is suitably simplified and the corresponding approximations are discussed. The procedure proposed is shown to be suitable also for the design of the state feedback via pole placement technique. A comparison with standard PI regulators is provided. The rotor flux is estimated by using a robust neural network observer. The network training set is suitably designed in order to preserve the drive effectiveness also in the presence of large parameter uncertainties. The robust neural observer is compared with an Extended Kalman filter and a standard neural network observer. Using a 250 kW induction motor as case study, the simulation results show the effectiveness of the proposed solution both during transient and steady state operating conditions.

    1998

    A. Larsen and J. H. Walther, “Discrete vortex simulation of flow around five generic bridge deck sections,” Journal of Wind Engineering and Industrial Aerodynamics, vol. 77-78, pp. 591–602, 1998. Publisher's VersionAbstract
    We present a bound on the generalization error of linear classifiers in terms of a refined margin quantity on the training sample. The result is obtained in a probably approximately correct (PAC)-Bayesian framework and is based on geometrical arguments in the space of linear classifiers. The new bound constitutes an exponential improvement of the so far tightest margin bound, which was developed in the luckiness framework, and scales logarithmically in the inverse margin. Even in the case of less training examples than input dimensions sufficiently large margins lead to nontrivial bound values and-for maximum margins-to a vanishing complexity term. In contrast to previous results, however, the new bound does depend on the dimensionality of feature space. The analysis shows that the classical margin is too coarse a measure for the essential quantity that controls the generalization error: the fraction of hypothesis space consistent with the training sample. The practical relevance of the result lies in the fact that the well-known support vector machine is optimal with respect to the new bound only if the feature vectors in the training sample are all of the same length. As a consequence, we recommend to use support vector machines (SVMs) on normalized feature vectors only. Numerical simulations support this recommendation and demonstrate that the new error bound can be used for the purpose of model selection.

    1997

    L. Milano, F. Barone, and M. Milano, “Time domain amplitude and frequency detection of gravitational waves from coalescing binaries,” Physical Review D, vol. 55, no. 8, pp. 4537–4554, 1997. Publisher's VersionAbstract
    We propose a multistep procedure for the on-line detection and analysis of gravitational wave signals emitted during the coalescence of compact binaries. This procedure, based on a hierarchical strategy, consists of a rough analysis of the gravitational wave signal using adaptive line enhancers (ALE) filters and the controlled random search (CRS) optimization algorithm Followed by a refined analysis using the classic matched-filtering technique. The results of simulations far the rough analysis are quite promising both for the relatively small computational power needed and for the robustness of the algorithms used, so that it could be very helpful far gravitational wave detection with very large baseline interferometric detectors like LIGO and VIRGO.
    L. Milano, F. Barone, and M. Milano, “Detection of gravitational waves from coalescing binaries in the time domain,” Classical and Quantum Gravity, vol. 14, no. 6, pp. 1531–1536, 1997. Publisher's VersionAbstract
    We propose a multistep procedure for the on-line detection and analysis of the gravitational wave signals emitted during the coalescence of compact binaries. This procedure, based on a hierarchical strategy, consists of a rough on-line analysis of the gravitational wave signal using adaptive line enhancers filters and a fast off-line parameter estimate, using the controlled random search optimization algorithm. A more refined off-line analysis using the classic matched-filtering technique, with a greatly reduced computational burden, can follow to further improve the parameter estimate. The results of simulations for the rough analysis are quite promising both for the relatively small computational power needed and for the robustness of the algorithms used, so that it could be very helpful for gravitational wave detection with very large baseline interferometric detectors such as LIGO and VIRGO.
    A. Larsen and J. H. Walther, “Aeroelastic analysis of bridge girder sections based on discrete vortex simulations,” Journal of Wind Engineering and Industrial Aerodynamics, vol. 66-67, pp. 253–265, 1997. Publisher's VersionAbstract
    Two-dimensional viscous incompressible flow past bridge girder cross-sections are simulated using the discrete vortex method. The flow around stationary cross-sections as well as cross-sections undergoing cross-wind vertical (bending) and rotary (torsional) motions are investigated for assessment of drag coefficient, Strouhal number and aerodynamic derivatives for application in aeroelastic analyses. Good to excellent agreement with wind tunnel test results is demonstrated for analyses of forced wind loading, flutter wind speed and vertical vortex-induced response of four practical girder cross-sections. The success of the simulations is attributed to the bluff nature of the cross-sections and to the two-dimensional (2-D) nature of flow around bridge girders.
    J. H. Walther and A. Larsen, “Two dimensional discrete vortex method for application to bluff body aerodynamics,” Journal of Wind Engineering and Industrial Aerodynamics, vol. 67-68, pp. 183–193, 1997. Publisher's VersionAbstract
    Two-dimensional viscous incompressible flow past a flat plate of finite thickness and length is simulated using the discrete vortex method. Both a fixed plate and a plate undergoing a harmonic heave and pitch motion are studied. The Reynolds number is 10(4) and the reduced onset flow speed, U/fc is in the range 2-14. The fundamental kinematic relation between the velocity and the vorticity is used in a novel approach to determine the surface vorticity. An efficient influence matrix technique is used in a fast adaptive multipole algorithm context to obtain a mesh-free method. The numerical results are compared with the steady-state Blasius solution, and with the inviscid solution for the flow past an oscillating plate by Theodorsen